Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_M17
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    29   0.88 
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    27   2.7  
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    27   2.7  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   4.7  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    27   4.7  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    27   4.7  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   8.2  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   8.2  

>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 15/57 (26%), Positives = 32/57 (56%)
 Frame = -2

Query: 743 EVSVERYFDKAIRHDNRLIVAVRRKAEVRRPRHVVTDPSKKKHAARKRFQKVVKMKI 573
           +V  E   ++ + +D +++    + AEV R R   ++  KKK+A   + Q++V+ K+
Sbjct: 736 KVKDEESSEEELMNDEQMLALDEKLAEVFRERKKASNKEKKKNAQETK-QQIVQFKV 791


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = -3

Query: 517 RNNILIVGNGSCTVTIIKYNQNILLLFLFSYTFIIALFNGLALSQPHVEYNNSALEK--- 347
           +NN+++ G G+C + + KY ++  L         IA F       P    +N+  +    
Sbjct: 406 KNNLVVAGGGACEMELSKYLRDYSLTISGKQQNFIAAFARSLEVIPRQLCDNAGFDSTNI 465

Query: 346 INKVKLQ 326
           +NK+++Q
Sbjct: 466 LNKLRMQ 472


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -3

Query: 751 NXLKLASNGTSIRLYVMIIALSXLSGERQKSDALDTSLRIHPKKSTRQGNV 599
           N   +A+N         I+A + +  +RQK +A + ++R H K+  R+  V
Sbjct: 139 NRDSIAANSARAAAEARILAQNEILLKRQKQEAREAAIREHQKEKERREQV 189


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = -1

Query: 372  NIIIQHWKK*IKSNSKLIFVTTCSRNILQQSLELTLFFKLARLF--IFLKLCC--WSC 211
            +++IQ WK      + LI    C+ + L     L   +KL   F  IFL+ C   W C
Sbjct: 1676 HLVIQIWKSLRVDGAGLINFDCCTEDDLNNPHLLFTLYKLLERFSLIFLRKCALLWYC 1733


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = +2

Query: 182 SKTYITYTTIHDQQHNFKKMKSRASLKKSVNSRLCCNMLREHVVTKISLE 331
           ++TY+    ++  +  + +     SL+KS+  ++CCN+L+E + +  S E
Sbjct: 759 AETYVRLAKLYHARGFYSRAAD--SLEKSI--QICCNVLKEDITSIFSWE 804


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/47 (25%), Positives = 17/47 (36%)
 Frame = +1

Query: 553 HWSXXXXXXXXXXXXKRFLAACFFLDGSVTTCLGRLTSAFLLTATIR 693
           HW             +R    CF LD  ++ C GR    +L    +R
Sbjct: 306 HWDHSEESRIDREVRRRCFWGCFTLDKLISLCYGRPPGLYLKQTDVR 352


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 112 LYSRSLSARFSQK*QPVRPFIYSFEDVHNLYY 207
           LY R LS  +++  + + PF   FE   NLYY
Sbjct: 82  LYQRELSEIYNKCLKALHPFYPVFEVNSNLYY 113


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +3

Query: 678 DSXDKAIIMTYSLIEVPFDANFXMFPGFIXDPDRRGKSTFLTNH 809
           DS     +M  +  E P+D N      FI + +++G  +   NH
Sbjct: 437 DSISLKYVMDLATFEEPYDFNPGQIEKFIMNGNKKGAFSIRLNH 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,236,059
Number of Sequences: 5004
Number of extensions: 63459
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)