Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_M17
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084197-14|AAM44396.1|  526|Caenorhabditis elegans Hypothetical...    33   0.27 
AC084197-13|AAM44395.1|  571|Caenorhabditis elegans Hypothetical...    33   0.27 
U88178-4|AAC24411.1|  460|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z71181-10|CAA94901.2|  678|Caenorhabditis elegans Hypothetical p...    29   5.8  
Z71177-11|CAA94873.2|  678|Caenorhabditis elegans Hypothetical p...    29   5.8  

>AC084197-14|AAM44396.1|  526|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.5b protein.
          Length = 526

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -2

Query: 740 VSVERYFDKAIRHDNRLIVAVRRKAEVRRPRHVVTDPSKKKHAARKR 600
           VS   +   + RH+NR   AV+R A   RP    TD S  +H+  +R
Sbjct: 106 VSSSTHHHHSNRHENRKSTAVKRPAADNRPMTYSTDVSVSRHSENRR 152


>AC084197-13|AAM44395.1|  571|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.5a protein.
          Length = 571

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -2

Query: 740 VSVERYFDKAIRHDNRLIVAVRRKAEVRRPRHVVTDPSKKKHAARKR 600
           VS   +   + RH+NR   AV+R A   RP    TD S  +H+  +R
Sbjct: 151 VSSSTHHHHSNRHENRKSTAVKRPAADNRPMTYSTDVSVSRHSENRR 197


>U88178-4|AAC24411.1|  460|Caenorhabditis elegans Hypothetical
           protein W09C3.2 protein.
          Length = 460

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 680 VRRKAEVRRPRHVVTDPSKKKHAARKRFQK 591
           V++ + +R+P  V  D S KK A+RKR +K
Sbjct: 351 VQKASSIRKPATVTPDKSIKKSASRKRSEK 380


>Z71181-10|CAA94901.2|  678|Caenorhabditis elegans Hypothetical
           protein K07C5.8 protein.
          Length = 678

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = -3

Query: 775 SGSXINP-GNXLKLASNGTSIRLYVMI--IALSXLSGERQKSDALDTSLRIHPKKS 617
           S   I+P G  L   S+  SIR++ M     L  +S  R+K+D+  TS+  HP +S
Sbjct: 604 SSLAIDPNGLYLLSGSHDGSIRMWNMEKRSCLQEISAHRKKNDSAVTSVAFHPSRS 659


>Z71177-11|CAA94873.2|  678|Caenorhabditis elegans Hypothetical
           protein K07C5.8 protein.
          Length = 678

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = -3

Query: 775 SGSXINP-GNXLKLASNGTSIRLYVMI--IALSXLSGERQKSDALDTSLRIHPKKS 617
           S   I+P G  L   S+  SIR++ M     L  +S  R+K+D+  TS+  HP +S
Sbjct: 604 SSLAIDPNGLYLLSGSHDGSIRMWNMEKRSCLQEISAHRKKNDSAVTSVAFHPSRS 659


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,997,027
Number of Sequences: 27780
Number of extensions: 361823
Number of successful extensions: 965
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)