Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_M13
         (1082 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0486 - 3455030-3455770                                           38   0.014
03_05_1081 + 30235677-30236474                                         30   3.7  
01_01_0082 + 625198-625719                                             30   3.7  
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814...    29   4.8  
11_06_0610 - 25449085-25453284                                         29   6.4  
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866...    29   8.5  

>06_01_0486 - 3455030-3455770
          Length = 246

 Score = 37.9 bits (84), Expect = 0.014
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +3

Query: 528 PFLXXXXTPXYXPPIXPYLVPXTXYPXIPPGHPXTXSSSLPPXSXXSHXP*TPPSXSP 701
           P++     P   P + PY+ P T  P +PP  P +    +PP +  S  P  PP   P
Sbjct: 98  PYVPPYIPPPTPPYVPPYIPPPTP-PYVPPPTPPSPPPYVPPPTPPSPPPYVPPPSPP 154



 Score = 35.9 bits (79), Expect = 0.056
 Identities = 19/50 (38%), Positives = 19/50 (38%)
 Frame = +3

Query: 552 PXYXPPIXPYLVPXTXYPXIPPGHPXTXSSSLPPXSXXSHXP*TPPSXSP 701
           P Y PP  P   P    P IPP  P       PP       P TPPS  P
Sbjct: 97  PPYVPPYIPPPTPPYVPPYIPPPTPPYVPPPTPPSPPPYVPPPTPPSPPP 146



 Score = 30.3 bits (65), Expect = 2.8
 Identities = 20/51 (39%), Positives = 22/51 (43%)
 Frame = +3

Query: 549 TPXYXPPIXPYLVPXTXYPXIPPGHPXTXSSSLPPXSXXSHXP*TPPSXSP 701
           TP Y P   PY VP    P  PP  P      +PP +     P TPPS  P
Sbjct: 89  TPPYVPSPPPY-VPPYIPPPTPPYVP----PYIPPPTPPYVPPPTPPSPPP 134


>03_05_1081 + 30235677-30236474
          Length = 265

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = +3

Query: 570 IXPYLVPXTXYPXIPPGHPXTXSSSLPPXSXXSHXP*TPPS 692
           I  Y  P + YP  PP  P      +PP     H P  PPS
Sbjct: 36  IPTYPPPPSAYPAAPP--PPVMGQPVPPPPAQLHDPTAPPS 74


>01_01_0082 + 625198-625719
          Length = 173

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 16/51 (31%), Positives = 20/51 (39%)
 Frame = +3

Query: 549 TPXYXPPIXPYLVPXTXYPXIPPGHPXTXSSSLPPXSXXSHXP*TPPSXSP 701
           TP Y PP  P   P    P +    P T S++ PP           PS +P
Sbjct: 61  TPVYYPPPPPVYYPPPSPPPVAYPPPTTPSTNCPPPPYGGGGYNPTPSYNP 111


>06_03_0874 -
           25580417-25580419,25580504-25580604,25580828-25581411,
           25581523-25581594,25581667-25581793,25583412-25583516,
           25583643-25583676
          Length = 341

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +3

Query: 558 YXPPIXPYLVPXTXYPXIPPGHPXTXSSSLPPXSXXSHXP*TPPS 692
           Y  P   Y +P   YP +PP +    +S +P     S  P  PPS
Sbjct: 166 YAAPSPSYALPPAGYPAVPP-YQSYPASHVPAPYPTSAYPHPPPS 209


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 33/137 (24%), Positives = 44/137 (32%), Gaps = 2/137 (1%)
 Frame = +3

Query: 549  TPXYXPPIXPYLVPXTXYPXIPPGHPXTXSSSLP-PXSXXSHXP*TPPSXSPXXXXXXXX 725
            TP   PP     VP +     PP    +  S  P   S  S     PPS +P        
Sbjct: 920  TPKSSPPSHEEYVPPSPAKSTPPPEEKSPPSHTPESSSPPSEESEPPPSPTPKSSPPSHE 979

Query: 726  XXXXXXXXXPSXPXXXHXXPXTLPXPTXXAAXXXXXXXXXLRXHPLXXSLXPLXRSXPPG 905
                      + P      P T   PT  ++         +   P+  S  P  +S PP 
Sbjct: 980  EYVPPSPAKSTPPPEKPLPPHT---PTINSS--PPSEEEYMPPSPVKSSPPPAEKSQPPP 1034

Query: 906  AXV-SXXPXXXSPXPHS 953
            + V S  P   S  PH+
Sbjct: 1035 SPVESVLPPVKSSPPHA 1051


>09_06_0277 -
           21983049-21983080,21983250-21984788,21986619-21986655,
           21987612-21987665,21987781-21987893,21988272-21988660,
           21988783-21988903,21989245-21989342,21989963-21990153
          Length = 857

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 17/51 (33%), Positives = 19/51 (37%)
 Frame = +3

Query: 549 TPXYXPPIXPYLVPXTXYPXIPPGHPXTXSSSLPPXSXXSHXP*TPPSXSP 701
           +P   PP  P + P    P I P    T SS  PP       P   PS  P
Sbjct: 373 SPPNPPPPPPPMSPSCLLPPIIPAPTFTYSSPPPPPLYYPPPPDISPSPPP 423


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,928,701
Number of Sequences: 37544
Number of extensions: 218891
Number of successful extensions: 707
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3234583292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)