Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_M12
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    28   2.1  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    27   3.7  
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo...    26   6.4  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    26   8.5  

>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +1

Query: 451 HNVKKVNDAFVSSGDFQQLPVNSSKNEPMIT--LPSPKLDNVWAAINV 588
           H +KK+ND     G   QLP+    NE  +T  +  PK  + + A N+
Sbjct: 112 HELKKLNDDHTVHGVLVQLPLPKHLNERTVTESITPPKDVDGFGAFNI 159


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 654 FFKNVILFHIKKEKTKLSMRLRYIDCGPN 568
           FFKN++  H   EK K S+ L  +  GP+
Sbjct: 594 FFKNILPLHFGLEKDKFSIFLDQVFRGPD 622


>SPAC12B10.07 |acp1||F-actin capping protein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +1

Query: 289 IRETQRENRDLKMPNVNMG--KKPDKYFSFTNVELPVKYNSK-FMNSIW 426
           +++ ++   D  + +V  G  KK D+  SFT V +  KYN K + N  W
Sbjct: 107 VKQIKKVASDHYLSDVTFGIIKKSDEVESFTIVLVSSKYNPKNYWNGSW 155


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +1

Query: 157 SNSFELIIPQKKAVTLSKLIFELCKACELKKMSCIPPSAF--TAGRIRETQRENRDLKMP 330
           S   +++IP K +V  + L   L   C    ++C+ P  F  T   +R ++   R   + 
Sbjct: 301 SKKNDVLIPYKDSVLTTLLQDALGGNCRTIMLTCVSPCDFDDTFSALRYSEAARRIKNIS 360

Query: 331 NVN 339
           N+N
Sbjct: 361 NIN 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,890,825
Number of Sequences: 5004
Number of extensions: 57941
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)