Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_M12
         (905 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF247970-1|AAF66431.1|  323|Caenorhabditis elegans cell cycle ch...    31   1.5  
AF067608-6|AAC17648.2|  194|Caenorhabditis elegans Hypothetical ...    29   3.5  
AF067608-7|AAM15538.1|  205|Caenorhabditis elegans Hypothetical ...    28   8.0  

>AF247970-1|AAF66431.1|  323|Caenorhabditis elegans cell cycle
           checkpoint protein Rad9 protein.
          Length = 323

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 7/131 (5%)
 Frame = +1

Query: 97  FMVLLNPRKFRCTYRSVCEDSNSFELIIPQKKAVTLSKLIFELCKACELKKMSCIPPSAF 276
           F   +N  KF C +R   E  N+ ++ +  KKAV + +L   +  A  + K        F
Sbjct: 39  FFKTVNRSKF-CVFRFAPEFFNACDVSMINKKAVNICRL--SMKSAQRIFKGVAFGEKNF 95

Query: 277 TAGRIRETQRENRDLKMPNVNMGKKP-----DKYFSFTNVELPVKYNSKFMNSIWGK--Y 435
                R   +  R +    +N GKK      +K   F+++E  +    + M S+  K  Y
Sbjct: 96  VGCEFRIDPKAERMMVKLQMNYGKKISCRIFEKLAEFSDIERTIHAKLREMGSMLHKPTY 155

Query: 436 NRYSPHNVKKV 468
           NR    N+  V
Sbjct: 156 NRSGCRNITVV 166


>AF067608-6|AAC17648.2|  194|Caenorhabditis elegans Hypothetical
           protein B0511.9a protein.
          Length = 194

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
 Frame = +1

Query: 133 TYRSVCEDSNSFELIIPQKKAVTLSKLIFELCKACELKKMSCI----PPSAFTAGRIRET 300
           T   +CED    + +  Q     L  +I   C+  ++ +M  +    PP   T   +R  
Sbjct: 9   TQLELCEDD--IQWLTDQLNKRVLPAVIVPKCEMMDIDEMEPMDQSEPPRGITRRNLRSA 66

Query: 301 QRENRDLKMPNVNMGKKPDKYFSFTNVELPV 393
            R+NRD+  P+     +     + T+   PV
Sbjct: 67  DRKNRDVPGPSTGECTRTSIAPTLTSARTPV 97


>AF067608-7|AAM15538.1|  205|Caenorhabditis elegans Hypothetical
           protein B0511.9b protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
 Frame = +1

Query: 133 TYRSVCEDSNSFELIIPQKKAVTLSKLIFELCKACELKKMSCI----PPSAFTAGRIRET 300
           T   +CED    + +  Q     L  +I   C+  ++ +M  +    PP   T   +R  
Sbjct: 9   TQLELCEDD--IQWLTDQLNKRVLPAVIVPKCEMMDIDEMEPMDQSEPPRGITRRNLRSA 66

Query: 301 QRENRDLKMPN 333
            R+NRD+  P+
Sbjct: 67  DRKNRDVPGPS 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,159,751
Number of Sequences: 27780
Number of extensions: 331411
Number of successful extensions: 822
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)