Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_M08
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    27   3.4  
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    26   5.9  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    26   5.9  

>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 170 QGFADAVAKTTTNKKNMILVKFILIFLXKAGFE 72
           QGF ++VA     K+N +L K++  F   AG+E
Sbjct: 203 QGFLESVASFLNRKENSLL-KYMRAFFQVAGYE 234


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 8/15 (53%), Positives = 15/15 (100%)
 Frame = -3

Query: 74  EYRVRNNKYQNLKEF 30
           E+R+RNN+Y++++EF
Sbjct: 394 EFRLRNNQYESVEEF 408


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = -2

Query: 594 SPKGTFIGVINKLNYYYMIHYTL*VCTSEIFVFYLYIKQFVNAS*P 457
           SPK TF  +IN   Y      TL V  +  F   LY    +  S P
Sbjct: 454 SPKDTFFDIINNQKYVVNTDGTLKVVITNGFPIVLYPTSKIETSLP 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,346,067
Number of Sequences: 5004
Number of extensions: 40231
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)