Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_M06
         (985 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.3  
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos...    27   3.1  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   3.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.1  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 14/45 (31%), Positives = 15/45 (33%)
 Frame = +2

Query: 842  PPPPPPXXEKXPPPPRXAXPXFXGXHPXGASPXXWXPXTPRGGXK 976
            P PPPP     PPP     P      P    P    P  P  G +
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDR 1749


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 11/17 (64%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
 Frame = +2

Query: 842 PPPPPPXXE--KXPPPP 886
           PPPPPP  E    PPPP
Sbjct: 11  PPPPPPGFEPPSQPPPP 27


>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
           Caf16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 12  YRSHYREFLKIWPTHLLHL 68
           Y +H  + L  WPTHL+HL
Sbjct: 184 YATHIFDGLAEWPTHLVHL 202


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
 Frame = -2

Query: 981 GGFXPPRGVXGXHXXGEAPXGCXPXKXGXAXRGG--GGXFSXXGGGGG 844
           GGF   RG  G    G    G    + G   RGG  GG     GG GG
Sbjct: 19  GGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 842 PPPPPPXXEKXPPPPRXAXP 901
           PPPPPP      PPP    P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 842 PPPPPPXXEKXPPPPRXAXP 901
           PPPPP      PPPP    P
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,649
Number of Sequences: 5004
Number of extensions: 42923
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 507285244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)