Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_M05
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    28   2.0  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    28   2.0  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   4.5  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    27   4.5  
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom...    26   6.0  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    26   6.0  
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    26   7.9  

>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
 Frame = -1

Query: 522 FFVVANCSAEGVSTLQSPIRQMPMLNLLAG-PA*IP---MTFHPRPSYATPSPPTQKWYP 355
           F +++ C    V  +   +  +   N L G PA I    +T    PS    S  +  WY 
Sbjct: 274 FHLLSRCGKHAVQNIHKILLPIFQKNFLTGFPAEITNLVLTHLDAPSLCAVSQVSHHWYK 333

Query: 354 MSPQPKELWYFCMLR 310
           +    +ELW    L+
Sbjct: 334 LVSSNEELWKSLFLK 348


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 659 QDDNYXRLKSLPAALLPDILSS*PDC 582
           QD++Y R+ +     LPDIL + P C
Sbjct: 306 QDESYCRICTQSCVTLPDILEAFPSC 331


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 21/71 (29%), Positives = 31/71 (43%)
 Frame = -1

Query: 534 VDRSFFVVANCSAEGVSTLQSPIRQMPMLNLLAGPA*IPMTFHPRPSYATPSPPTQKWYP 355
           VD S    A+ +   ++  QS    MP L  L  P  IP     R   + P P  Q  + 
Sbjct: 196 VDPSTMADAHNAHSSLTPPQSGYSSMPSLPYLQQPFQIPSQRFSRQQQSHPFPAAQ--HA 253

Query: 354 MSPQPKELWYF 322
           ++ QP+ L+ F
Sbjct: 254 VNGQPQALYPF 264


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -1

Query: 459 MPMLNLLAGPA*IPMTFHPRPSYATPSP-PTQKWYPMSP 346
           MPM+N+  GP   P+   P P     SP P     P +P
Sbjct: 274 MPMMNVPMGPGGAPLVPPPPPGMVMASPSPAAATIPGAP 312


>SPBC16E9.17c |rem1||meiosis-specific cyclin
           Rem1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 354 MSPQPKELWYFCMLRISLIHWVVVLHT 274
           MS QP   +Y   +R S+I+W+V +HT
Sbjct: 164 MSAQP---YYVTEMRASVINWIVGVHT 187


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
 Frame = -2

Query: 404 RGLRTPP-HRRLR------RNGIQCHPSLRNCGISACFAYLSYIGLWCCI 276
           +GL+ P  H RLR      R G++    L++C  +     +  +G++ CI
Sbjct: 213 KGLKNPELHERLRSSISRERIGVEVDKMLKHCNTNRALKIIHSLGMFACI 262


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +1

Query: 208 KRHKTSEQAGALCHYTSHRYSDCMQHHNPMYERYAKHAEIPQ 333
           KRH  +       HY S+   D ++      E Y++ +E+P+
Sbjct: 205 KRHVDNYNENRRRHYDSYSSYDELERRRSSNESYSRRSELPR 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,831
Number of Sequences: 5004
Number of extensions: 64867
Number of successful extensions: 173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)