Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_M05
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0385 + 2915532-2916482 31 1.2
11_06_0610 - 25449085-25453284 29 3.6
01_01_0710 + 5492389-5492745,5493664-5493948,5494121-5494438,549... 29 3.6
12_02_0280 - 16729000-16729678,16729948-16730039,16730072-167307... 29 4.8
12_01_1031 - 10605581-10606088,10606360-10606420,10606448-106064... 29 6.3
04_01_0152 - 1757244-1757369,1758675-1758926,1759594-1759665,176... 29 6.3
02_01_0692 + 5179778-5181847 29 6.3
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 28 8.3
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 28 8.3
03_02_0909 - 12310460-12310759,12310882-12310989,12311099-123112... 28 8.3
02_05_1339 + 35793795-35794922,35795009-35795233,35795314-35795460 28 8.3
>11_01_0385 + 2915532-2916482
Length = 316
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 411 FHPRPSYATPSPPTQKWYPMSPQP 340
FHP P+ A P P KW P+ P P
Sbjct: 206 FHPPPTPAWPHPGGNKWPPLPPFP 229
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.5 bits (63), Expect = 3.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 405 PRPSYATPSPPTQKWYPMSPQPKE 334
P Y P PP+ W P SP+ K+
Sbjct: 504 PPAEYGAPPPPSSGWLPKSPERKK 527
>01_01_0710 +
5492389-5492745,5493664-5493948,5494121-5494438,
5494900-5495127,5495884-5495984,5496493-5496604,
5496654-5496662,5496897-5497340,5497649-5497909
Length = 704
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/59 (23%), Positives = 28/59 (47%)
Frame = -2
Query: 491 VSRLSNLQSGKCRCSIYWLVQHEYL*RSTRGLRTPPHRRLRRNGIQCHPSLRNCGISAC 315
+ +L L + + CS+Y + EY+ GL + P + + ++C+ CG+ C
Sbjct: 173 IIKLEGLVTSRMSCSLYLVF--EYMEHDLAGLASFPGVKFTESQVKCYMQQLLCGLEHC 229
>12_02_0280 -
16729000-16729678,16729948-16730039,16730072-16730772,
16731033-16731144,16731961-16731970,16732954-16733663
Length = 767
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +2
Query: 116 YTSSHPRLIEKDHLSVDFPVCSRDCWGAVPSKDTRPLNKPVP 241
YT P+L EK L+ DF C + C GA+P T L+ P
Sbjct: 652 YTHRFPKL-EKFILACDFLPCLKFCIGAMPQLQTLKLDDRRP 692
>12_01_1031 - 10605581-10606088,10606360-10606420,10606448-10606491,
10606664-10608382,10609848-10610791
Length = 1091
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +3
Query: 228 TSRCPMSLYITPLFRLYA 281
TSRCP S YI P F YA
Sbjct: 1005 TSRCPASRYIAPAFTEYA 1022
>04_01_0152 -
1757244-1757369,1758675-1758926,1759594-1759665,
1760529-1760648,1761014-1761037
Length = 197
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 493 RCLDSPISNQANADAQFIGWSSMNTYDVPPAAFVRHPIAAYA 368
R ++ ISN+ D +G +N PA+F HPI + A
Sbjct: 5 RVIECHISNRCGRDGNGVGRGGLNRNGPAPASFRVHPIPSPA 46
>02_01_0692 + 5179778-5181847
Length = 689
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = -1
Query: 525 SFFVVANCSAEGVSTLQSPIRQMPMLNLLAGPA*IPMTFHPRPSYATPSPP 373
++F++AN + +G+ST Q+ I Q P+ + A +T R A PSPP
Sbjct: 145 TYFIIANLTYQGLSTCQALIAQNPLHDSRGLVAGDNLTVPLR--CACPSPP 193
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 423 IPMTFHPRPSYATPSPPTQKWYPMSPQ 343
+P +P P TPSPP YP P+
Sbjct: 428 LPPVVYPSPPEVTPSPPEIAPYPSPPE 454
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = -1
Query: 480 LQSPIRQMPMLNLLAGPA*IPMTFHP-RPSYATPSPPTQKWYPMSPQP 340
L P Q PM L A P P P P A P PP + P P+P
Sbjct: 567 LSPPAPQAPMPPLKASPVPPPEPSPPPAPKAAPPPPPPKSTGPGPPRP 614
>03_02_0909 -
12310460-12310759,12310882-12310989,12311099-12311272,
12311370-12311490,12311569-12311651,12311754-12312420,
12314073-12314440
Length = 606
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 487 LDSPISNQANADAQFIGWSSMNTYDVPPAAFVRHP 383
LDSP+++ AD+ F+G+S V PA F++ P
Sbjct: 573 LDSPVASPVAADSNFVGFSY-----VRPAPFLQRP 602
>02_05_1339 + 35793795-35794922,35795009-35795233,35795314-35795460
Length = 499
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 404 RGLRTPPHRRLRRNGIQCHPSLRNCGIS 321
R LR+PP RL + + CHP + + G++
Sbjct: 265 RMLRSPPRERLTAHQVLCHPWVCDDGVA 292
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,999,517
Number of Sequences: 37544
Number of extensions: 465936
Number of successful extensions: 1653
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1646
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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