BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_L13
(1354 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 31 2.1
11_06_0756 + 26952196-26952264,26952760-26953206,26954009-269553... 30 3.7
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 31.1 bits (67), Expect = 2.1
Identities = 18/57 (31%), Positives = 18/57 (31%)
Frame = -3
Query: 986 PPPPXPPAGGXXXXARPGXCXGXRTHXLXHHPXLXHAXXXXHXXAXPGTPPTPPXXP 816
PPPP P ARP G T P A P PP PP P
Sbjct: 274 PPPPPPSPAPIQHFARPLHVWGHPTMDPSRVPVWPPRHLVPRGPAPPWVPPPPPSDP 330
>11_06_0756 +
26952196-26952264,26952760-26953206,26954009-26955358,
26955400-26955408
Length = 624
Score = 30.3 bits (65), Expect = 3.7
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 986 PPPPXPPAGGXXXXARPGXCXG 921
PPPP PPA RP C G
Sbjct: 542 PPPPPPPAAAEAARERPSGCDG 563
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,960,247
Number of Sequences: 37544
Number of extensions: 139835
Number of successful extensions: 3562
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3050
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4260112632
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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