Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_L11
(1088 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 39 0.001
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.092
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 31 0.28
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 0.86
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.5
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 2.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 4.6
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 27 6.1
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 8.0
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 39.1 bits (87), Expect = 0.001
Identities = 29/89 (32%), Positives = 33/89 (37%), Gaps = 2/89 (2%)
Frame = +3
Query: 525 SXXPPNQRDXPHRXXPCHSPXPSTRAPSTRANPPXSHXXFLPSRXRXXPXPXHLPXPLPP 704
S PP+ P P P T AP + PP S P + P P LP P P
Sbjct: 121 SAAPPSAPAPP---TPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177
Query: 705 QXXPPXALPP--PHLXXXXPPXXPRFPXP 785
P PP P L PP P+ P P
Sbjct: 178 AA--PVKSPPSAPSLPSAVPPMPPKVPPP 204
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.7 bits (71), Expect = 0.092
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = +3
Query: 612 RANPPXSHXXFLPSRXRXXPXPXHLPXPLPPQXXPPXALPPPHLXXXXPPXXPRFP 779
++ PP +P+ P P +P P P PP PPP + PP P P
Sbjct: 730 KSPPPPPPAVIVPT---PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 31.1 bits (67), Expect = 0.28
Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Frame = +1
Query: 556 HTAXXHVTPXGHQHAPPQPVPTXXXXTAXFFPPAXXXXPXHXIXPH-PSPXXXPHRWRSH 732
H + +P H H PP P PP P H PSP PH+ S
Sbjct: 124 HACSNNQSPFPHSHHPPLHNPLPVSCQPVLRPPPVPQVPSHWYPVSLPSP-NLPHQPISK 182
Query: 733 PPI 741
PP+
Sbjct: 183 PPV 185
Score = 26.2 bits (55), Expect = 8.0
Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Frame = +3
Query: 591 STRAPSTRANP-PXSHXXFLPSRXRXXPXPXHLPXPLP--PQXXPPXALPP---PHLXXX 752
S A S +P P SH L + P P P+P P P +LP PH
Sbjct: 122 SYHACSNNQSPFPHSHHPPLHNPLPVSCQPVLRPPPVPQVPSHWYPVSLPSPNLPHQPIS 181
Query: 753 XPPXXPRFP 779
PP P P
Sbjct: 182 KPPVIPNLP 190
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.5 bits (63), Expect = 0.86
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = -2
Query: 778 GKRGXXGGXXXXRWGGGSAXGGXXXGGRGXGRWXGXGXXRXREGRK 641
G RG GG GGG GGRG R G R G K
Sbjct: 23 GGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAK 68
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 1.1
Identities = 21/73 (28%), Positives = 24/73 (32%)
Frame = +3
Query: 603 PSTRANPPXSHXXFLPSRXRXXPXPXHLPXPLPPQXXPPXALPPPHLXXXXPPXXPRFPX 782
P+ + PP + PS P PLPP P A P P PP P P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSA--PIAPPLPAGMPAAPPLPPAAPA 475
Query: 783 PXTLXPXXXXXPV 821
P PV
Sbjct: 476 PPPAPAPAPAAPV 488
Score = 27.5 bits (58), Expect = 3.5
Identities = 23/80 (28%), Positives = 27/80 (33%)
Frame = +3
Query: 579 SPXPSTRAPSTRANPPXSHXXFLPSRXRXXPXPXHLPXPLPPQXXPPXALPPPHLXXXXP 758
+P P+ S A PP + + P P LP PP PP A PP L P
Sbjct: 390 APPPAIPGRSAPALPPLGNAS--RTSTPPVPTPPSLPPSAPPS-LPPSA--PPSLPMGAP 444
Query: 759 PXXPRFPXPXTLXPXXXXXP 818
P P P P
Sbjct: 445 AAPPLPPSAPIAPPLPAGMP 464
Score = 26.6 bits (56), Expect = 6.1
Identities = 23/75 (30%), Positives = 26/75 (34%), Gaps = 7/75 (9%)
Frame = +3
Query: 582 PXPSTRAPST-RANPPXSHXXFLPSRXRXXPX-PXHLPXPLPP-----QXXPPXALPPPH 740
P P APST R PP S + + P P LPP + P PP
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPS 422
Query: 741 LXXXXPPXXPRFPXP 785
L PP P P
Sbjct: 423 LPPSAPPSLPPSAPP 437
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 675 PXHLPXPLPPQXXPPXALPPPHLXXXXPPXXPRFPXP 785
P + P PP PP ++PPP P P P P
Sbjct: 1699 PPQMSAPTPPP--PPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Frame = +3
Query: 669 PXPXHLPXP--LPPQXXPPXALPPPHLXXXXPPXXP 770
P P +P P PP P + PPP L P P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Score = 26.2 bits (55), Expect = 8.0
Identities = 16/54 (29%), Positives = 17/54 (31%)
Frame = +3
Query: 570 PCHSPXPSTRAPSTRANPPXSHXXFLPSRXRXXPXPXHLPXPLPPQXXPPXALP 731
P H P + A P S P P P P P P PP LP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 28.3 bits (60), Expect = 2.0
Identities = 22/54 (40%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = -2
Query: 742 RWGGGSAXGGXXXGGRG--XGR-WXGXGXXRXREG-RKXXXEXGGLARVEGARV 593
R GGGS G GGRG GR G G R R G R G +A G +V
Sbjct: 444 RTGGGSRGGRGGFGGRGGFGGRGGFGGGRGRGRGGARSGNPNRGSVAPFSGNKV 497
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 4.6
Identities = 24/84 (28%), Positives = 27/84 (32%)
Frame = +3
Query: 570 PCHSPXPSTRAPSTRANPPXSHXXFLPSRXRXXPXPXHLPXPLPPQXXPPXALPPPHLXX 749
P S P PS A P + +P P P P+PP P A P P
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPP----VPKPAAGVPPVPP---PSEAPPVPKPSV 1205
Query: 750 XXPPXXPRFPXPXTLXPXXXXXPV 821
PP P P P PV
Sbjct: 1206 GVPPVPPPSTAPPVPTPSAGLPPV 1229
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 26.6 bits (56), Expect = 6.1
Identities = 16/64 (25%), Positives = 23/64 (35%)
Frame = +1
Query: 547 AXXHTAXXHVTPXGHQHAPPQPVPTXXXXTAXFFPPAXXXXPXHXIXPHPSPXXXPHRWR 726
A T P + P+P+ + + FPP P H PH P H
Sbjct: 130 ATSETTVQDYNPQVQSYCRPEPLSSNHVRSCPPFPPTQHHHP-HTRPPHHPPHPHFHN-N 187
Query: 727 SHPP 738
++PP
Sbjct: 188 NYPP 191
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 8.0
Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Frame = +3
Query: 669 PXPXHLPXPLPPQXXPPXALPP--PHLXXXXPPXXPRFPXPXTL 794
P P LP PP P ALPP P P P P L
Sbjct: 1885 PPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAPVPL 1928
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,887
Number of Sequences: 5004
Number of extensions: 33644
Number of successful extensions: 105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 573748416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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