Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_L10
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    48   1e-07
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   8.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.8  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   8.8  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 48.0 bits (109), Expect = 1e-07
 Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 8/167 (4%)
 Frame = +1

Query: 94  GASSGIGAATAVFLSKLGAQLSLTGRNVENLQKVSKDC-DKFASTLSITADLTKESDIEK 270
           GA+SGIG      L   G ++      V+ ++ + ++   K    + +  DL+ ++DI K
Sbjct: 14  GANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEELKSKPGKLVPLQCDLSNQNDILK 73

Query: 271 IIKKTIDHYGKLDVLVNNAGIIETGTIENTSLAQYDRLMNTNVRSIYYLTMLAVPHLLET 450
           +I+    + G +D+L+NNA I    T++N  +  + ++ + N+  +  + +  V  L++ 
Sbjct: 74  VIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGLTCM-IQEVLKLMKK 132

Query: 451 KGXXXXXXXXXGIRSFPGVL-------AYNISKASVDQLTRCVALEI 570
           KG            S   +L       AY  SK ++  LT C+  E+
Sbjct: 133 KGINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRSEL 179


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 244 LTKESDIEKIIKKTI-DHYGKLD-VLVNNAGIIETGTIENTSL 366
           LT++  +  +    I DH G +  V++ N+G++     E+TSL
Sbjct: 215 LTRQVVVSSVANVRIADHRGVMPPVILENSGVVHVAQDESTSL 257


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 244 LTKESDIEKIIKKTI-DHYGKLD-VLVNNAGIIETGTIENTSL 366
           LT++  +  +    I DH G +  V++ N+G++     E+TSL
Sbjct: 215 LTRQVVVSSVANVRIADHRGVMPPVILENSGVVHVAQDESTSL 257


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 787 HTGTSDVTCQVAGK 746
           HTG    TC + GK
Sbjct: 226 HTGEKPYTCDICGK 239


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 592 NPDTFRCQFLKQHSEL 545
           NPD FR     +HS+L
Sbjct: 417 NPDIFRVSCATEHSQL 432


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 592 NPDTFRCQFLKQHSEL 545
           NPD FR     +HS+L
Sbjct: 123 NPDIFRVSCATEHSQL 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,690
Number of Sequences: 438
Number of extensions: 5095
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)