Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_L01
         (1038 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.62 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   5.7  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.62
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +3

Query: 750 PPPPPRXRRXXXXRXPPQLQXXPXXSRXPPLPRXGPKS 863
           PPPPPR         PPQ +  P     PP PR  P +
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAP----PPPPPRSAPST 372



 Score = 27.5 bits (58), Expect = 3.3
 Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
 Frame = +3

Query: 444 RXSXSLPHVXRYXRSXKMEXATXSXXRRSXIPXXSPNLSPXXXXISPXXX-CPPHXPXXP 620
           R + +LP +    R+      T      S  P   P+  P     +P     PP  P  P
Sbjct: 398 RSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAP 457

Query: 621 PXPPXHPLAXP 653
           P P   P A P
Sbjct: 458 PLPAGMPAAPP 468


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -1

Query: 654 GGSRGDXGVXQXGRXXCGGGXG 589
           GGSRG  G    GR   GGG G
Sbjct: 12  GGSRGGRGGFNGGRGGFGGGRG 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,948,580
Number of Sequences: 5004
Number of extensions: 23465
Number of successful extensions: 64
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 543234592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)