Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_L01
(1038 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L23648-6|AAA28032.2| 390|Caenorhabditis elegans Hypothetical pr... 33 0.44
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.58
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.58
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.4
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.4
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.4
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 30 2.4
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 30 2.4
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 30 3.1
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 29 4.1
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 29 4.1
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 29 4.1
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 29 4.1
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 29 5.4
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 29 5.4
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 5.4
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 29 5.4
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 29 7.2
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 28 9.5
AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 28 9.5
>L23648-6|AAA28032.2| 390|Caenorhabditis elegans Hypothetical
protein F44B9.5 protein.
Length = 390
Score = 32.7 bits (71), Expect = 0.44
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = +2
Query: 242 PIGVIXMVIRIFLGVILWIASIXLPNKWAVXXMLTTLACWTXGVYVXLXGQXXPPCSVXV 421
P+G+I ++IR+FLG +I + L A+ + C G+ V G V
Sbjct: 40 PVGLIILLIRVFLGFHTFIVACLLRKSAALRMHTLRIMCSILGIVVEKSGHRDESARVLC 99
Query: 422 AXYXTMXSXL 451
A + ++ L
Sbjct: 100 ANHVSILDHL 109
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.3 bits (70), Expect = 0.58
Identities = 20/89 (22%), Positives = 25/89 (28%)
Frame = +3
Query: 534 IPXXSPNLSPXXXXISPXXXCPPHXPXXPPXPPXHPLAXPPNXXXXGPLDXXXXXXXXXX 713
+P P+++P + P P P P P PP GP
Sbjct: 263 VPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPP 322
Query: 714 XXXXXXXXXXXXPPPPPRXRRXXXXRXPP 800
PPPPP R PP
Sbjct: 323 SRFGPPGMGGMPPPPPPGMRYPGGMPPPP 351
Score = 29.9 bits (64), Expect = 3.1
Identities = 26/87 (29%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
Frame = +3
Query: 597 PPHXPXXPPXPPXHP-LAXPPNXXXXGPLDXXXXXXXXXXXXXXXXXXXXXXPPPPPRXR 773
PP P P PP P + PP GP PPPPPR
Sbjct: 300 PPPPPGRTPGPPGMPGMPPPPPPSRFGP---PGMGGMPPPPPPGMRYPGGMPPPPPPRYP 356
Query: 774 RXXXXRXPPQLQXXPXXSRXPPLPRXG 854
PP P SR PP P G
Sbjct: 357 SAGPGMYPP-----PPPSR-PPAPPSG 377
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.3 bits (70), Expect = 0.58
Identities = 20/89 (22%), Positives = 25/89 (28%)
Frame = +3
Query: 534 IPXXSPNLSPXXXXISPXXXCPPHXPXXPPXPPXHPLAXPPNXXXXGPLDXXXXXXXXXX 713
+P P+++P + P P P P P PP GP
Sbjct: 273 VPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPP 332
Query: 714 XXXXXXXXXXXXPPPPPRXRRXXXXRXPP 800
PPPPP R PP
Sbjct: 333 SRFGPPGMGGMPPPPPPGMRYPGGMPPPP 361
Score = 29.9 bits (64), Expect = 3.1
Identities = 26/87 (29%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
Frame = +3
Query: 597 PPHXPXXPPXPPXHP-LAXPPNXXXXGPLDXXXXXXXXXXXXXXXXXXXXXXPPPPPRXR 773
PP P P PP P + PP GP PPPPPR
Sbjct: 310 PPPPPGRTPGPPGMPGMPPPPPPSRFGP---PGMGGMPPPPPPGMRYPGGMPPPPPPRYP 366
Query: 774 RXXXXRXPPQLQXXPXXSRXPPLPRXG 854
PP P SR PP P G
Sbjct: 367 SAGPGMYPP-----PPPSR-PPAPPSG 387
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.1 bits (67), Expect = 1.4
Identities = 29/111 (26%), Positives = 31/111 (27%)
Frame = +3
Query: 525 RSXIPXXSPNLSPXXXXISPXXXCPPHXPXXPPXPPXHPLAXPPNXXXXGPLDXXXXXXX 704
R+ P P SP P PP P PP P PP P
Sbjct: 268 RTGSPPPPPTGSPPPP---PAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP--------- 315
Query: 705 XXXXXXXXXXXXXXXPPPPPRXRRXXXXRXPPQLQXXPXXSRXPPLPRXGP 857
PPPPPR +R R PP PR GP
Sbjct: 316 --QAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGP 364
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.1 bits (67), Expect = 1.4
Identities = 29/111 (26%), Positives = 31/111 (27%)
Frame = +3
Query: 525 RSXIPXXSPNLSPXXXXISPXXXCPPHXPXXPPXPPXHPLAXPPNXXXXGPLDXXXXXXX 704
R+ P P SP P PP P PP P PP P
Sbjct: 289 RTGSPPPPPTGSPPPP---PAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP--------- 336
Query: 705 XXXXXXXXXXXXXXXPPPPPRXRRXXXXRXPPQLQXXPXXSRXPPLPRXGP 857
PPPPPR +R R PP PR GP
Sbjct: 337 --QAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGP 385
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.1 bits (67), Expect = 1.4
Identities = 29/111 (26%), Positives = 31/111 (27%)
Frame = +3
Query: 525 RSXIPXXSPNLSPXXXXISPXXXCPPHXPXXPPXPPXHPLAXPPNXXXXGPLDXXXXXXX 704
R+ P P SP P PP P PP P PP P
Sbjct: 274 RTGSPPPPPTGSPPPP---PAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP--------- 321
Query: 705 XXXXXXXXXXXXXXXPPPPPRXRRXXXXRXPPQLQXXPXXSRXPPLPRXGP 857
PPPPPR +R R PP PR GP
Sbjct: 322 --QAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGP 370
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 30.3 bits (65), Expect = 2.4
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 597 PPHXPXXPPXPPXHPLAXPP 656
PPH P PP P HP A P
Sbjct: 271 PPHHPYGPPHPMHHPYAMMP 290
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 30.3 bits (65), Expect = 2.4
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 597 PPHXPXXPPXPPXHPLAXPP 656
PPH P PP P HP A P
Sbjct: 271 PPHHPYGPPHPMHHPYAMMP 290
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.9 bits (64), Expect = 3.1
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +3
Query: 549 PNLSPXXXXISPXXXCPPHXPXXPPXPPXHPLAXPP 656
P L I P CPP PP PP P PP
Sbjct: 41 PPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPP 76
Score = 28.7 bits (61), Expect = 7.2
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +3
Query: 537 PXXSPNLSPXXXXISPXXXCPPHXPXXPPXPPXHPLAXPP 656
P P +P P CPP PP P P PP
Sbjct: 32 PPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPP 71
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 29.5 bits (63), Expect = 4.1
Identities = 14/42 (33%), Positives = 16/42 (38%)
Frame = +3
Query: 528 SXIPXXSPNLSPXXXXISPXXXCPPHXPXXPPXPPXHPLAXP 653
S P S ++ P P PP P PP P HP P
Sbjct: 690 SDTPAPSTSVPPPTSVQPPQPQQPPQGPPGPPGPQQHPGPYP 731
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 29.5 bits (63), Expect = 4.1
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = -1
Query: 657 WGGSRGDXGVXQXGRXXCGGGXGXXGKXVGLXXKGWGXG 541
WGG G G R GGG G G G GWG G
Sbjct: 25 WGGGPGRWGGWGGNRWGGGGGPGGWGNNGG---GGWGRG 60
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 29.5 bits (63), Expect = 4.1
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +3
Query: 483 RSXKMEXATXSXXRRSXIPXXSPNLSPXXXXISPXXXCPPHXPXXPPXPPXHPLAXPP 656
+S +E S ++ P SP L P +S PP P PP PP + PP
Sbjct: 51 KSTVIEVEQSSRQQQVGRPTESPPLPPPPLPLSN----PPAKPTPPPPPPKPTIRPPP 104
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 29.5 bits (63), Expect = 4.1
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +3
Query: 483 RSXKMEXATXSXXRRSXIPXXSPNLSPXXXXISPXXXCPPHXPXXPPXPPXHPLAXPP 656
+S +E S ++ P SP L P +S PP P PP PP + PP
Sbjct: 273 KSTVIEVEQSSRQQQVGRPTESPPLPPPPLPLSN----PPAKPTPPPPPPKPTIRPPP 326
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 29.1 bits (62), Expect = 5.4
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 750 PPPPPRXRRXXXXRXPPQLQXXPXXSRXPPLPR 848
PPP P+ + P + + P S+ PP PR
Sbjct: 357 PPPAPKRAKSRSKSPPARRRRSPSASKSPPAPR 389
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 29.1 bits (62), Expect = 5.4
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +3
Query: 549 PNLSPXXXXISPXXXCPPHXPXXPPXPPXHPLAXPP 656
P+ P + P P P PP PP P PP
Sbjct: 223 PSEPPSPGPVDPSDEPSPSDPPGPPGPPGPPTRRPP 258
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.1 bits (62), Expect = 5.4
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Frame = +3
Query: 750 PPPPPRXRRXXXXRXPPQLQ---XXPXXSRXPPLPRXGPK 860
PPPPPR R R PP + P R PP P+
Sbjct: 140 PPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPE 179
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 29.1 bits (62), Expect = 5.4
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 582 PXXXCPPHXPXXPPXPPXHPLAXP 653
P CPP P PP PP P P
Sbjct: 129 PRTCCPPPTPAAPPPPPPPPPPAP 152
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 28.7 bits (61), Expect = 7.2
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 582 PXXXCPPHXPXXPPXPPXHPLAXPP 656
P CPP PP PP P PP
Sbjct: 61 PAQFCPPPPICPPPPPPPMPCPPPP 85
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 28.3 bits (60), Expect = 9.5
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +3
Query: 537 PXXSPNLSPXXXXISPXXXCPPHXPXXPPXPPXHPLAXPPN 659
P P +P P PP P PP PP P P+
Sbjct: 334 PSPQPAATPVEITEIPPIISPPAPPPPPPPPPPPPPPQTPS 374
>AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 28.3 bits (60), Expect = 9.5
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -1
Query: 654 GGSRGDXGVXQXGRXXCGGGXGXXGKXVGLXXKGWGXG 541
GGS G G G GGG G G GWG G
Sbjct: 213 GGSGGGGGGGGGGGYGSGGGWGGGGGGRDRDRGGWGGG 250
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,724,518
Number of Sequences: 27780
Number of extensions: 170312
Number of successful extensions: 833
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2751568594
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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