Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_K23
         (970 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       33   0.005
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.1  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    23   3.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 32.7 bits (71), Expect = 0.005
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +2

Query: 512 PQKXPPPPPXXGXPXGGPP--PPXPXP 586
           PQ+  PP P  G P GGPP  PP   P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 10/21 (47%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
 Frame = +1

Query: 496 GGXXXPPKX-PPPPPXGXXAP 555
           G    PPK  PPPPP     P
Sbjct: 333 GDSDTPPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 932 PPXTXPPPXPP 964
           PP   PPP PP
Sbjct: 338 PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 516  WGXXXPPPPPP 484
            W    PPPPPP
Sbjct: 1350 WRQQQPPPPPP 1360



 Score = 21.8 bits (44), Expect = 9.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 511  PPKXPPPPPXG 543
            PP  PPPP  G
Sbjct: 1355 PPPPPPPPSSG 1365


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 11/26 (42%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
 Frame = -1

Query: 502 PPPPPPXGXKXXX---GGGGXGFXPP 434
           PP PPP          G  G GF PP
Sbjct: 52  PPGPPPNNEDSSGVIVGASGYGFVPP 77


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +1

Query: 409  GXGXGXPXGGXKXXPPPPP 465
            G     P  G    PPPPP
Sbjct: 1846 GSARNIPVSGSPEPPPPPP 1864



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 513  GXXXPPPPPP 484
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,829
Number of Sequences: 438
Number of extensions: 7367
Number of successful extensions: 40
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31927896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)