Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_K15
         (1003 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       32   0.009
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.81 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 31.9 bits (69), Expect = 0.009
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +3

Query: 750 GXPPPPXPXPRXPRGXPPPXXXRPPPPXXPPXGXXXPPRXPP 875
           G  P P   P+ P+   PP   + PPP  PP     PP   P
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGA---PPSQNP 60



 Score = 25.8 bits (54), Expect = 0.61
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +3

Query: 603 AXXPXPXPXGRAXRPXXXGPPXXRXXPPXPXPPPPXP 713
           A  P P P      P    PP     PP   PP   P
Sbjct: 20  APGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 25.8 bits (54), Expect = 0.61
 Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
 Frame = +3

Query: 684 PXPXPPPPXPPGXXXXXXXPPXGXPPPP--XPXPRXPRGXPP 803
           P P P P   P        P  G PP P   P P  P G PP
Sbjct: 21  PGPQPSPHQSP------QAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 25.0 bits (52), Expect = 1.1
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = +2

Query: 824 APXPAXPXPXXXPPPXPXPXPPRXXPPXXXP 916
           +P  +   P    PP P   PP   PP   P
Sbjct: 26  SPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 25.0 bits (52), Expect = 1.1
 Identities = 11/22 (50%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
 Frame = +1

Query: 478 PPXPXXXPP--GPXGPPPXLXP 537
           PP P   PP  GP G PP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.4 bits (48), Expect = 3.3
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +1

Query: 739 PXPXGXPXPPXPXXXXPGGAPP 804
           P   G P PP P      G PP
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPP 431



 Score = 22.6 bits (46), Expect = 5.7
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +1

Query: 859 PPAXPXPXAXPGPPPRXXPPXP 924
           P   P P   P  P R  PP P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNP 42



 Score = 22.6 bits (46), Expect = 5.7
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = +1

Query: 859 PPAXPXPXAXPGPPPRXXPPXPP 927
           P     P    GPPP   P  PP
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 7.6
 Identities = 12/42 (28%), Positives = 12/42 (28%)
 Frame = +3

Query: 792 GXPPPXXXRPPPPXXPPXGXXXPPRXPPXXRXPGXXPPXXXP 917
           G P P       P  P  G    P   P    P   PP   P
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.81
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 681 PPXPXPPPPXP 713
           PP P PPPP P
Sbjct: 338 PPKPAPPPPPP 348



 Score = 23.0 bits (47), Expect = 4.3
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 741 PPXGXPPPPXPXPRXP 788
           PP   PPPP P    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 741  PPXGXPPPPXPXPR 782
            P  G P PP P PR
Sbjct: 1852 PVSGSPEPPPPPPR 1865


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.154    0.560 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,131
Number of Sequences: 438
Number of extensions: 11147
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33258225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)