Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_K10
         (1097 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   6.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 21/72 (29%), Positives = 22/72 (30%)
 Frame = +2

Query: 623 PPPPXXHXIRTPVLXPSXXPLXLPASPXXXXPSXQPXHXGXPXPPXXSLTPPAHXXXAXS 802
           PPPP    + TP   P   P   P       P   P   G   PP     PP     A  
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP---PPPPPAVSAGG 789

Query: 803 SXXNAQXPXPLP 838
           S   A  P   P
Sbjct: 790 SRYYAPAPQAEP 801


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 18/67 (26%), Positives = 23/67 (34%)
 Frame = +2

Query: 578 SPPXXTAXXXXPXRXPPPPXXHXIRTPVLXPSXXPLXLPASPXXXXPSXQPXHXGXPXPP 757
           +PP  +     P   PP P     + P +  S  P   PA+P    PS        P  P
Sbjct: 143 APPRPSIPPPSPASAPPIPS----KAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198

Query: 758 XXSLTPP 778
                PP
Sbjct: 199 PKVPPPP 205


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 21/72 (29%), Positives = 23/72 (31%), Gaps = 5/72 (6%)
 Frame = +2

Query: 581 PPXXTAXXXXPXRXPPPPXXHXIRTPVLXPS---XXPLXLPASP--XXXXPSXQPXHXGX 745
           PP   A        P PP       P L PS     P+  PA+P      P   P   G 
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGM 463

Query: 746 PXPPXXSLTPPA 781
           P  P      PA
Sbjct: 464 PAAPPLPPAAPA 475


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,044,364
Number of Sequences: 5004
Number of extensions: 22998
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 579724962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)