Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_K08
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    27   4.6  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   4.6  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    27   4.6  
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.1  

>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 276 ILPSKIDDVKLDPNRRYVRSVTNPENNEAS-IESSHHTVDIGLDRP 410
           + P+    + L PN   + S  + ENN+++  +++     IGLDRP
Sbjct: 93  LFPNDNSVIALKPNEEKLNSSLSVENNDSTYTDATLIAPKIGLDRP 138


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +3

Query: 240  NIPRAP-STADHPILPSKIDDVKLDPNRRYVRSVTNPENNEASIESSHHTVDI 395
            ++P AP S A +  LP   ++ K+DP    ++++  P   +A  ++S   VD+
Sbjct: 1939 SMPNAPPSVASNAKLPPASNNRKVDPLEDILQAMPPPTTRKARGKTSKRYVDV 1991


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -3

Query: 370 SMDASLFSGLVTL--RTYLLFGSSFTSSIFEGRIGWSAVLGA 251
           S + SLFS       R    F   F    F G++GW  +LG+
Sbjct: 347 SSNTSLFSNFTFFLSREVPRFSLEFVIRAFGGKVGWDPILGS 388


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
 Frame = +2

Query: 146 PADLQATTDTAPDNTY---SATSWPGTAMAVSR*QYSSCAEYCRPSDSSFENRRCEARSK 316
           P D + T     D  Y   S T  P  AMA    Q S      + S S   N+  E ++ 
Sbjct: 70  PLDSELTDMEDDDTEYISDSTTDLPSAAMARGTRQLSYNENLDQRSFSKTPNKHIEVKNL 129

Query: 317 QKVCSQCYQSR 349
           + +CS  +  R
Sbjct: 130 KDLCSPSHSGR 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,258,751
Number of Sequences: 5004
Number of extensions: 65705
Number of successful extensions: 209
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)