Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_K04
(922 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 32 0.50
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 31 1.2
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 31 1.2
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 31 1.2
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 30 2.7
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 30 2.7
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 29 6.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 8.2
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 8.2
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 8.2
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical protein
R08B4.1b protein.
Length = 1160
Score = 32.3 bits (70), Expect = 0.50
Identities = 23/72 (31%), Positives = 23/72 (31%)
Frame = -3
Query: 920 GXGLXGGGXXKXXXXGGGXXXXPXXGXPTGGGXXXGPNPFPKGEKXDXVSGKXAGLGQGX 741
G G GGG GGG G GGG G G D G AG G G
Sbjct: 798 GGGGGGGGGGSGGSGGGGSNSNSGGGGGNGGGGNGGGGNGNGGGAGDGNGGAGAGNGNGA 857
Query: 740 XTXGXXQGGXPG 705
G G G
Sbjct: 858 GA-GNGNGAGAG 868
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/71 (29%), Positives = 24/71 (33%), Gaps = 2/71 (2%)
Frame = -3
Query: 920 GXGLXGGGXXKXXXXGGGXXXXPXXGXPTGGGXXXGPNPFPKGEKXDXV--SGKXAGLGQ 747
G G GG GG P G +G G + F GEK SG G
Sbjct: 71 GSGFGGGNTCGSGFGGGSTGGSPYGGASSGFGGSTATSGFGSGEKSSAFGGSGGFGGSAT 130
Query: 746 GXXTXGXXQGG 714
G + G GG
Sbjct: 131 GFGSGGGSFGG 141
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/71 (29%), Positives = 24/71 (33%), Gaps = 2/71 (2%)
Frame = -3
Query: 920 GXGLXGGGXXKXXXXGGGXXXXPXXGXPTGGGXXXGPNPFPKGEKXDXV--SGKXAGLGQ 747
G G GG GG P G +G G + F GEK SG G
Sbjct: 71 GSGFGGGNTCGSGFGGGSTGGSPYGGASSGFGGSTATSGFGSGEKSSAFGGSGGFGGSAT 130
Query: 746 GXXTXGXXQGG 714
G + G GG
Sbjct: 131 GFGSGGGSFGG 141
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/71 (29%), Positives = 24/71 (33%), Gaps = 2/71 (2%)
Frame = -3
Query: 920 GXGLXGGGXXKXXXXGGGXXXXPXXGXPTGGGXXXGPNPFPKGEKXDXV--SGKXAGLGQ 747
G G GG GG P G +G G + F GEK SG G
Sbjct: 71 GSGFGGGNTCGSGFGGGSTGGSPYGGASSGFGGSTATSGFGSGEKSSAFGGSGGFGGSAT 130
Query: 746 GXXTXGXXQGG 714
G + G GG
Sbjct: 131 GFGSGGGSFGG 141
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.9 bits (64), Expect = 2.7
Identities = 25/80 (31%), Positives = 25/80 (31%), Gaps = 8/80 (10%)
Frame = -3
Query: 920 GXGLXGGGXXKXXXXGGGXXXXPXX--------GXPTGGGXXXGPNPFPKGEKXDXVSGK 765
G G GGG GGG P G GGG P P P G G
Sbjct: 30 GGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGG 89
Query: 764 XAGLGQGXXTXGXXQGGXPG 705
G G G G GG G
Sbjct: 90 CGGGGGGCGGGGGCGGGGGG 109
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/69 (28%), Positives = 21/69 (30%)
Frame = -3
Query: 920 GXGLXGGGXXKXXXXGGGXXXXPXXGXPTGGGXXXGPNPFPKGEKXDXVSGKXAGLGQGX 741
G G GGG GGG P G GGG G + G G G
Sbjct: 188 GGGCGGGGSS----GGGGYAVAPSGGGGCGGGGSSGGGGYASAPSGGGGYATSGGGGSGG 243
Query: 740 XTXGXXQGG 714
G GG
Sbjct: 244 YATGGSSGG 252
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.9 bits (64), Expect = 2.7
Identities = 25/80 (31%), Positives = 25/80 (31%), Gaps = 8/80 (10%)
Frame = -3
Query: 920 GXGLXGGGXXKXXXXGGGXXXXPXX--------GXPTGGGXXXGPNPFPKGEKXDXVSGK 765
G G GGG GGG P G GGG P P P G G
Sbjct: 30 GGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGG 89
Query: 764 XAGLGQGXXTXGXXQGGXPG 705
G G G G GG G
Sbjct: 90 CGGGGGGCGGGGGCGGGGGG 109
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/69 (28%), Positives = 21/69 (30%)
Frame = -3
Query: 920 GXGLXGGGXXKXXXXGGGXXXXPXXGXPTGGGXXXGPNPFPKGEKXDXVSGKXAGLGQGX 741
G G GGG GGG P G GGG G + G G G
Sbjct: 188 GGGCGGGGSS----GGGGYAVAPSGGGGCGGGGSSGGGGYASAPSGGGGYATSGGGGSGG 243
Query: 740 XTXGXXQGG 714
G GG
Sbjct: 244 YATGGSSGG 252
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 28.7 bits (61), Expect = 6.2
Identities = 23/76 (30%), Positives = 25/76 (32%), Gaps = 4/76 (5%)
Frame = -3
Query: 920 GXGLXGGGXXKXXXXGGGXXXXPXXGXPTG--GGXXXGPNPFPKG--EKXDXVSGKXAGL 753
G G+ GGG GGG G G GG GP + G G G
Sbjct: 106 GGGMGGGGYGGGGYGGGGDGGGGYGGYGGGGYGGMGGGPGGYGMGGYGGGGGGGGDFGGY 165
Query: 752 GQGXXTXGXXQGGXPG 705
G G G GG G
Sbjct: 166 GGGGMGGGGYGGGGDG 181
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 8.2
Identities = 30/125 (24%), Positives = 33/125 (26%), Gaps = 9/125 (7%)
Frame = +2
Query: 398 PXPRXKXXXFXXPXPXPPPXTPXPRXXGXGXXXXXPQXXXXXXPXXRGXPXXKXFXQXAX 577
P P+ P PPP P G P P G P
Sbjct: 241 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG-GSPPPPRAGSPPP 299
Query: 578 KXPXXXKXPXXXXFPX----GPPPXXNLQKIXPPXQRXQ-----XPTGX*KSXXFPPXXP 730
P P P PPP PP Q+ Q PTG + P P
Sbjct: 300 PPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRP 359
Query: 731 PRCXP 745
PR P
Sbjct: 360 PRGGP 364
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 8.2
Identities = 30/125 (24%), Positives = 33/125 (26%), Gaps = 9/125 (7%)
Frame = +2
Query: 398 PXPRXKXXXFXXPXPXPPPXTPXPRXXGXGXXXXXPQXXXXXXPXXRGXPXXKXFXQXAX 577
P P+ P PPP P G P P G P
Sbjct: 262 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG-GSPPPPRAGSPPP 320
Query: 578 KXPXXXKXPXXXXFPX----GPPPXXNLQKIXPPXQRXQ-----XPTGX*KSXXFPPXXP 730
P P P PPP PP Q+ Q PTG + P P
Sbjct: 321 PPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRP 380
Query: 731 PRCXP 745
PR P
Sbjct: 381 PRGGP 385
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 8.2
Identities = 30/125 (24%), Positives = 33/125 (26%), Gaps = 9/125 (7%)
Frame = +2
Query: 398 PXPRXKXXXFXXPXPXPPPXTPXPRXXGXGXXXXXPQXXXXXXPXXRGXPXXKXFXQXAX 577
P P+ P PPP P G P P G P
Sbjct: 247 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG-GSPPPPRAGSPPP 305
Query: 578 KXPXXXKXPXXXXFPX----GPPPXXNLQKIXPPXQRXQ-----XPTGX*KSXXFPPXXP 730
P P P PPP PP Q+ Q PTG + P P
Sbjct: 306 PPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRP 365
Query: 731 PRCXP 745
PR P
Sbjct: 366 PRGGP 370
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,635,927
Number of Sequences: 27780
Number of extensions: 145787
Number of successful extensions: 534
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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