Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_K03
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family...    29   0.90 
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    28   1.6  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    27   3.6  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    26   6.3  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    26   6.3  

>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 672 RFG-FRFISVEHVVKFKMQLFDRFIFVIETGE 580
           +FG  RFI VE   KFK   +DR + V  TG+
Sbjct: 261 KFGTMRFIIVEGTEKFKPDYWDRVVCVFTTGQ 292


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/72 (22%), Positives = 34/72 (47%)
 Frame = +1

Query: 493 DTEIKTDKARIEVDIKMKTIVKDGKSYYKFTGFDYKYEPIEKLHFKFDNMFNGDKAKAEP 672
           D  + +D A  E + K+   + +  +YY     D   EP +++   +D++ NG+  +   
Sbjct: 541 DEVVFSDTASGEKNTKLN--IDESTNYYNTDSIDKVGEPFDEISSGYDDLMNGNDKQGND 598

Query: 673 FLKLLDQSWKEL 708
             ++ + S  EL
Sbjct: 599 IPEVQEASLIEL 610


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 136 ILDANAGAIDFIKPCAWNDKACILDSSKLALPYFVKGIP 252
           ILD N  A  F+K C  N K  I+   K+   +  KG P
Sbjct: 31  ILDKNVNAKQFVKTCWRNKKPLIVKEGKI---FVDKGFP 66


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 619 LHFKFDNMFNGDKAKAEPFLKLLDQSWKELAQLGN-PLIKAIVMKEASNI 765
           LH++ + M+N   ++AE   +LL  S  E  + G    IK++   EA+ +
Sbjct: 480 LHYQLNQMYNSSASEAESDQELLLSSGDERVERGKIGSIKSVKSDEATPV 529


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/72 (19%), Positives = 35/72 (48%)
 Frame = -3

Query: 350 PSTFISLNRXXXXXXXXXXXSMVKGSTGETPISGIPLTKYGSANFDESKMQALSFQAQGL 171
           PS+ + L++           S ++  +    +SG+        +  E ++ +L  ++ G 
Sbjct: 24  PSSDVHLSKAALEKARQTLQSQLEDKSAHDEVSGLLRNNPAMLSMIEGRLSSLVGKSSGY 83

Query: 170 MKSIAPALASKI 135
           ++S+APA+ ++I
Sbjct: 84  IESLAPAVQNRI 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,165,852
Number of Sequences: 5004
Number of extensions: 64942
Number of successful extensions: 167
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)