Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_K03
         (898 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0470 - 21113186-21114183,21114273-21115824                       29   3.8  
05_03_0074 + 8095355-8096575,8096664-8096901,8096990-8097667,809...    29   5.0  
05_03_0071 - 8044217-8045142,8045303-8045411,8045634-8046854           29   5.0  
04_01_0511 + 6678765-6678801,6678904-6679923,6680012-6680718           29   5.0  
10_08_0954 + 21779561-21779639,21779780-21779862,21786887-217869...    28   8.8  
08_02_1258 - 25670092-25670152,25671124-25671327,25671400-256716...    28   8.8  

>06_03_0470 - 21113186-21114183,21114273-21115824
          Length = 849

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 565 KSYYKFTGFDYKYEPIEKLHFKFDNMFNGDKAKAEPFLKLLDQSWKEL 708
           K   K    D KY+PI++    F +  N  +  A+ FL ++D+  +EL
Sbjct: 634 KHKVKVVDMDGKYKPIQRSRKFFKDAINYHRFHADMFLGVIDRQLQEL 681


>05_03_0074 +
           8095355-8096575,8096664-8096901,8096990-8097667,
           8097787-8097974
          Length = 774

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 565 KSYYKFTGFDYKYEPIEKLHFKFDNMFNGDKAKAEPFLKLLDQSWKEL 708
           K   K    D KY+PI++    F +  N  +  A+ FL ++D+  +EL
Sbjct: 603 KHKVKVVDMDGKYKPIQRSRKFFRDAINYHRFHADMFLGVIDRQLQEL 650


>05_03_0071 - 8044217-8045142,8045303-8045411,8045634-8046854
          Length = 751

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 565 KSYYKFTGFDYKYEPIEKLHFKFDNMFNGDKAKAEPFLKLLDQSWKEL 708
           K   K    D KY+PI++    F +  N  +  A+ FL ++D+  +EL
Sbjct: 536 KHKVKVVDMDGKYKPIQRSRKFFRDAINYHRFHADMFLGVIDRQLQEL 583


>04_01_0511 + 6678765-6678801,6678904-6679923,6680012-6680718
          Length = 587

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 565 KSYYKFTGFDYKYEPIEKLHFKFDNMFNGDKAKAEPFLKLLDQSWKEL 708
           K   K    D KY+PI++    F +  N  +  A+ FL ++D+  +EL
Sbjct: 469 KHKVKVVDMDGKYKPIQRSRKFFKDAVNYHRFHADMFLGVIDRQLQEL 516


>10_08_0954 +
           21779561-21779639,21779780-21779862,21786887-21786946,
           21786980-21787169,21787250-21787302,21787523-21787603,
           21787703-21787819
          Length = 220

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
 Frame = -2

Query: 654 ISVEHVVKFKMQLFDRFIF----VIETGEFVVALAVFH 553
           +S+E   ++ +Q+FD F      VI+ G+FV AL VFH
Sbjct: 90  LSLEIYTEWTLQIFDLFDVKKRGVIDFGDFVRALNVFH 127


>08_02_1258 -
           25670092-25670152,25671124-25671327,25671400-25671611,
           25671701-25671749,25671833-25672612,25672696-25672767,
           25672907-25672954,25673053-25673127,25673238-25673312,
           25673614-25673668,25673931-25674016,25674759-25674988
          Length = 648

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +1

Query: 562 GKSYYKFTGFDYKYEPIEKLHFKFDNM-FNGDKAKAEPFLKLLDQSWKELAQLGNPL 729
           G  YY   G     EP    H K D+  FNG  + A  + K LD  W++  Q  +P+
Sbjct: 341 GVDYY---GMSETNEPKGLRHVKADSRTFNGASSNAAEWEKKLDSFWQDRIQGQDPM 394


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,107,707
Number of Sequences: 37544
Number of extensions: 376790
Number of successful extensions: 877
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)