Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_J23
         (895 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0119 + 1102872-1104170,1105419-1105516,1105849-1106206           30   2.9  
09_01_0136 - 2030523-2031062,2032349-2032534,2032642-2032796,203...    29   3.8  
01_03_0168 - 13397297-13397756,13397852-13397917,13397999-13398111     29   6.6  

>01_01_0119 + 1102872-1104170,1105419-1105516,1105849-1106206
          Length = 584

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -1

Query: 799 PLSLXKSMGDGNHSPSGGLYARLPTMAIKKNYFHSCXPERYHMSFLKR 656
           PLSL  S        SG   A LPT  +++   HS  P R+H S   R
Sbjct: 534 PLSLPPSFAAAESPFSGSAAAALPTSKLRR---HSSPPRRHHRSCRNR 578


>09_01_0136 -
           2030523-2031062,2032349-2032534,2032642-2032796,
           2032917-2033079
          Length = 347

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 262 TTRWAVSWTTTLCSKKKNLSRAGYHLRSVTHAHKRLYACG 381
           +T   + + T       N ++A  H+R V  AH R+Y CG
Sbjct: 213 STEHVMKYLTGSAKTYVNAAQAYVHVRDVAEAHVRVYDCG 252


>01_03_0168 - 13397297-13397756,13397852-13397917,13397999-13398111
          Length = 212

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 590 TSAMPRAEPNSCLSLSTYSPQASFQEGHVIPLWXAAVEVIF 712
           TS+    +P     + + SP A+    H+IP W   +E+ F
Sbjct: 35  TSSRKDGQPQEYSCIQSPSPVATSNREHIIPNWVPQIEMTF 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,138,165
Number of Sequences: 37544
Number of extensions: 462530
Number of successful extensions: 906
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)