Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_J16
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    26   7.9  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    26   7.9  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   7.9  
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    26   7.9  

>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 615 FPLEAPSCALLFRPW 659
           FPLE  +CA+ FR W
Sbjct: 177 FPLELTTCAITFRYW 191


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 615 FPLEAPSCALLFRPW 659
           FPLE  +CA+ FR W
Sbjct: 170 FPLELTTCAITFRYW 184


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = +2

Query: 539 LXEHHKNRRSSQRWRNPTGL*RYQAF----PPG 625
           L ++HKNR+S+     P GL  Y+A     PPG
Sbjct: 387 LQDYHKNRKSNFNKPGPDGLGLYKAVLLSGPPG 419


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 23  IIGNFLKISRPRISLXLRVNLDPDMIRYIDEFGQTTT 133
           IIG   + S PR++  L+V LD     YID +G  TT
Sbjct: 108 IIGYDTRPSSPRLAELLKVCLDEMSASYID-YGYITT 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,027,619
Number of Sequences: 5004
Number of extensions: 58117
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)