Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_J13
(879 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988... 32 0.53
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 31 0.92
03_06_0471 + 34169562-34169892,34170121-34170347 31 0.92
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 31 1.6
01_01_0421 + 3181139-3184207 31 1.6
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 30 2.1
06_01_0882 + 6759378-6759707,6759837-6760488,6760609-6760673,676... 30 2.1
02_04_0382 - 22501041-22501279,22501717-22501810 29 4.9
>05_05_0156 + 22792783-22793410,22797153-22797227,22797644-22798879,
22798947-22799155,22799240-22800209,22800395-22800465
Length = 1062
Score = 32.3 bits (70), Expect = 0.53
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = -3
Query: 238 AVSIRVVVFGRINDVRAVVNRFVAVSLSVGHSQQSEDENHEEFHFYMITSYHRRK 74
A I +++G ++D ++F+ +S QS+DEN + H + +YH +K
Sbjct: 985 ACDIIRILYGEVHDHSPFDDKFLPLSFDAQIDSQSDDENDKSGHGRIKGNYHSKK 1039
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 31.5 bits (68), Expect = 0.92
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +2
Query: 50 NCWSTTLIFSPVITRDHIKMKFFMIFVLALLAMANAQGNGYEPIDNRPYIVNPPKDYNPN 229
N W T L+ PV + + FMI+ ++L + N G P+D+ Y+ + P DY
Sbjct: 466 NDWHTALL--PVYLKAYYHDNGFMIYARSVLVIHNIAHQGRGPLDDFSYL-DLPVDYMDL 522
Query: 230 GNGYEP 247
Y+P
Sbjct: 523 FKLYDP 528
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 31.5 bits (68), Expect = 0.92
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +2
Query: 170 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFPG 319
Y P P PP Y P+ GY P GAY +P + P +PG
Sbjct: 56 YPPAGGYPGAQYPPSGYPPSQGGYPP---GAYPPSGYPQQPGYPPAGYPG 102
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = +2
Query: 170 YEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDRPQGRPYFKPTPFPGARG 328
Y P + P V PP Y P +G P N + Y + P GRP P P GA G
Sbjct: 394 YAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYGAGG 448
>01_01_0421 + 3181139-3184207
Length = 1022
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = -2
Query: 221 CSLWED*RCTGGCQ*VRSRFLERWP*PAERGRKS*RISFLYDHELSQAKILKLCSNNLNL 42
C WE RC GG + W +RG KS + + +L+ + L L N+ NL
Sbjct: 79 CCRWEGVRCGGGGT-AAAGGRVTWLDLGDRGLKSGHLDQVI-FKLNSLEYLNLAGNDFNL 136
Query: 41 KEFPYS 24
E P++
Sbjct: 137 SEIPFT 142
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +2
Query: 158 QGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPF 313
QG Y+P R PP+ P Y P G Y +PQG+PY P P+
Sbjct: 246 QGETYQPQPQRE--TYPPQ---PQVQPYPPKPQGQPYPPQPQGQPY-PPQPY 291
>06_01_0882 +
6759378-6759707,6759837-6760488,6760609-6760673,
6761363-6761440,6761523-6761633,6761739-6761783,
6762200-6762373,6762841-6763797
Length = 803
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +2
Query: 50 NCWSTTLIFSPVITRDHIKMKFFMIFVLALLAMANAQGNGYEPIDNRPYIVNPPKDYNPN 229
N W T L+ PV + + + M + ++L + N G P+D PY + P+ Y +
Sbjct: 449 NDWHTALL--PVYLKAYYRDNGMMQYTRSVLVIHNIAYQGRGPVDEFPY-MELPEHYLDH 505
Query: 230 GNGYEPI 250
Y+P+
Sbjct: 506 FKLYDPV 512
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 29.1 bits (62), Expect = 4.9
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Frame = +2
Query: 113 FFMIFVLALLAMAN-AQGNGYEPIDNRPYIVNPPK----DYNPNGNGYEPIDNGAYYVDR 277
F ++ A +A A +G P ++ + PP D P+ + Y+P + YY D
Sbjct: 16 FALLLAAAFVASAEQTHDDGDNPPESPDHEDPPPSPEYYDPPPSPDYYDPPHSPDYY-DP 74
Query: 278 PQGRPYFKPTPFPGARGG 331
P Y+ P P P GG
Sbjct: 75 PPSPDYYDPPPSPYYGGG 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,458,142
Number of Sequences: 37544
Number of extensions: 349760
Number of successful extensions: 926
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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