Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_J11
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    30   0.39 
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     28   1.6  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.6  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    27   3.6  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    26   8.3  
SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi...    26   8.3  

>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 191 TLPGKYSTA*RTKRPHSDPPSLTASNRVSRTWTPASVS 304
           TLP   +T  +T R  + PPS   SNR +  + P SVS
Sbjct: 455 TLPPIQTTTIQTSREVAPPPSSINSNRAASPFRPTSVS 492


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +1

Query: 223 NKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAESYSVFAELFDPII 360
           N+  S+ +      Q  + +      IY PD   Y ++A LF PI+
Sbjct: 479 NEALSYSNNAFSKSQEALFHPSMVTTIYFPDESKYGIYAPLFAPIL 524


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 221 RTKRPHSDPPSLTASNRVSRTWTPASVS 304
           R  RP  +PP L+ASN    T  P++ S
Sbjct: 391 RMVRPIGNPPDLSASNEAEATMPPSNGS 418


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +3

Query: 492 ARGVPLQP-LPHRVPXTRRWRTRSPAPXSSLEGELKGHVLPPHRHVEGDPAAAHRRPLPV 668
           +R +P  P LP  VP  R  R+ S    +SL  ++K     P R +   P AA +  +  
Sbjct: 73  SREIPSDPPLPRAVPTVRLGRSTSSRSRNSLNLDMKDPSEKPRRSL---PTAAGQNNI-- 127

Query: 669 QGGRPLPAG 695
            G  P P G
Sbjct: 128 -GSPPTPPG 135


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 355 IIEDYHNGFKKTDKHPPKNW 414
           I++  ++ FK + KH P+NW
Sbjct: 304 IVQHKNDIFKSSQKHQPRNW 323


>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -2

Query: 248 VDPNEVFL--FFRLSNTSLVRYFFSSDLESDXLELAETSLQFLEGCGVDHCCGF 93
           ++ N +FL  FF +S+TS++   F    E     +A+  +Q      +D C G+
Sbjct: 295 LETNILFLSEFFEVSSTSILAKHFKLSEEQVDTVVADMVIQERLNASIDQCEGY 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,620
Number of Sequences: 5004
Number of extensions: 56979
Number of successful extensions: 207
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)