Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_J10
(851 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306... 32 0.67
01_07_0360 + 43056226-43057566 30 2.0
11_05_0103 - 19083663-19083856,19083962-19084169,19084239-190843... 29 3.6
07_03_1160 - 24430240-24431268 29 3.6
01_06_1370 + 36721006-36721042,36721235-36721719,36722782-367231... 29 4.7
05_04_0124 + 18232961-18236636,18236810-18237288,18237549-182376... 29 6.2
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032... 29 6.2
05_01_0092 - 609537-609941,610067-610328,610624-610731,611083-61... 29 6.2
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417... 29 6.2
01_01_0489 + 3608720-3608811,3609326-3609431,3609518-3609581,360... 29 6.2
11_01_0411 - 3114959-3115000,3115504-3116703 28 8.2
05_03_0107 - 8470386-8470559,8470694-8471737 28 8.2
05_01_0040 - 273384-273437,273920-274102,274465-274677,275479-27... 28 8.2
01_01_0099 - 751627-752126,752866-753056,753188-753945 28 8.2
>06_02_0046 +
10928708-10928798,10929997-10930077,10930567-10930685,
10931275-10931894,10931992-10933184,10933280-10933359,
10933751-10933846,10933931-10934004,10936007-10936151,
10936323-10936487
Length = 887
Score = 31.9 bits (69), Expect = 0.67
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 603 PESPQSIPNQPPDNLXAKPPSEGYPCELSLSTVSVP-GFVCKGQLLF 740
P + IP PP+N A PP P S+ST ++P +V + L++
Sbjct: 497 PPEDEWIPPPPPENEPAPPPPPEEPAVSSVSTETIPQSYVDQANLVY 543
>01_07_0360 + 43056226-43057566
Length = 446
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +1
Query: 175 RECTKHVCGSCYLKSCCATRHHRPRSKQYTLKDLGFPFQMRASRYSRFTVSSTRKWK 345
+EC +C +C L CC H +P K L PF + SR V++T K
Sbjct: 330 KECGHQMCAACTLAICC---HSKPNPKTLLLHPPACPF--CRTTISRLVVATTNSNK 381
>11_05_0103 -
19083663-19083856,19083962-19084169,19084239-19084323,
19084591-19084865
Length = 253
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -1
Query: 674 IAFRWWFSGQVVWRLIGYGLRGL--WVQTGAGEFYSWCYFRALCVYWIT 534
+ WW G +V R +GL WV+ G + +W + + + W+T
Sbjct: 123 VGLEWWAVGHMVKRPDNKDNKGLEWWVKEIVGPWVTWWWVKEIVGPWVT 171
>07_03_1160 - 24430240-24431268
Length = 342
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +3
Query: 570 PGIEFTSTSLNPESPQSIPNQPPDNLXAKPPSEGYP 677
P + ST NP P SIPNQPP + P P
Sbjct: 209 PSVPDQSTQPNPNGP-SIPNQPPQPIPNGPIKPDQP 243
>01_06_1370 +
36721006-36721042,36721235-36721719,36722782-36723187,
36723430-36723530,36723618-36723662
Length = 357
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 558 SEITPGIEFTSTSLNPESPQSIPNQPPDNLXAK 656
SE+ P FT ++ N + P +PN P +NL K
Sbjct: 325 SEVIPN--FTVSNENDQMPSEVPNDPSENLQDK 355
>05_04_0124 + 18232961-18236636,18236810-18237288,18237549-18237629,
18238033-18238041,18238096-18238248
Length = 1465
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 633 PPDNLXAKPPSEGYPCEL 686
PPD L A+P ++G PC L
Sbjct: 1056 PPDRLSARPSTDGGPCNL 1073
>05_04_0122 + 18198594-18202269,18202551-18202591,18203273-18203281,
18203336-18203551,18204257-18204361,18204761-18204919
Length = 1401
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 633 PPDNLXAKPPSEGYPCEL 686
PPD L A+P ++G PC L
Sbjct: 1056 PPDRLSARPSTDGGPCNL 1073
>05_01_0092 -
609537-609941,610067-610328,610624-610731,611083-611204,
611295-611366,611531-611590,611692-611874
Length = 403
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +1
Query: 175 RECTKHVCGSCYLKSCCATRHHRPRSKQYTLKDLGFPFQMRASRYSRFTVSSTR 336
++C +C C L CC H++P T PF R S SR V+ TR
Sbjct: 289 QDCGHQMCAPCTLALCC---HNKPNPTTLTPPSPACPF-CRGS-ISRLVVAQTR 337
>03_05_0520 +
25139314-25139364,25139580-25139711,25141594-25141731,
25143191-25143241,25143662-25143751,25143854-25144000,
25144108-25144218,25144307-25144375,25144777-25145517,
25145840-25146004,25146376-25146442,25146580-25146704,
25148714-25148983,25149065-25149199,25149316-25149497,
25149669-25149744
Length = 849
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 591 TSLNPESPQSIPNQPPDNLXAKPPSEGYPCELSLSTVSV 707
T+ +P+S P PP + ++P P +S ST +V
Sbjct: 282 TASQESNPESAPQTPPSKVGSQPSVPVVPTTISTSTAAV 320
>01_01_0489 +
3608720-3608811,3609326-3609431,3609518-3609581,
3609905-3609965,3610017-3610144,3610236-3610385,
3610537-3610791,3611060-3611265,3611469-3611696,
3612161-3612259
Length = 462
Score = 28.7 bits (61), Expect = 6.2
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +3
Query: 438 DKIYFWTFVIKDGLGYRQDNGEWTVEGFVDEAGNPVNTEGSEITPGIEFTSTSLNPES-- 611
D + W + +DG Y DNG + + +AGN T P E L P S
Sbjct: 37 DPVAGWYYSGRDGQYYIYDNGNYV--PWTPDAGNEPKTH----NPCDESNQDFLEPSSGL 90
Query: 612 PQSIPNQPPDNLXAKPPSE 668
Q IP+ N +PPSE
Sbjct: 91 EQDIPDN--QNETQRPPSE 107
>11_01_0411 - 3114959-3115000,3115504-3116703
Length = 413
Score = 28.3 bits (60), Expect = 8.2
Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 4/151 (2%)
Frame = +3
Query: 390 NGRWIFRDRNAALKIGDKIYFWTFVIKDGLGYRQDNGEWTVEGFVDEAGNPVNTEGSEIT 569
N W+ R+R L + Y W + + + +Q W + ++ N + +E +
Sbjct: 185 NDGWLIRNRQIRLDLWHVDYLWNWGLMSWVVQQQGGKMWPIR-LINSGINSI-SEALAVL 242
Query: 570 PGIEFTSTSLNPESPQSIPNQPPDNLXAKPPSEGYPC----ELSLSTVSVPGFVCKGQLL 737
+ T+ P+ P++ P PP + + PC L L + SVP + L
Sbjct: 243 QLLLNTARRPLPDLPRASP-PPPVLYLPRQAAPAVPCPPAPPLWLPSPSVPSSLALHVPL 301
Query: 738 FEDQFNIPIHRGKIWVPXVKXLXEPDFPFXV 830
F + R W P + P P V
Sbjct: 302 FHAS---SLER---WSPTALAMAPPSLPLRV 326
>05_03_0107 - 8470386-8470559,8470694-8471737
Length = 405
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 585 TSTSLNPESPQSIPNQPPDNLXAKPPSEGYPCELSLSTVSVPGFVCKGQLLFEDQ 749
T T P S S+ P A + PC T+ G + KG+++ EDQ
Sbjct: 3 TVTQAPPPSTPSMVGNPDGGAPAAAADQSAPCATGGETLVGEGRLRKGKMVAEDQ 57
>05_01_0040 -
273384-273437,273920-274102,274465-274677,275479-276294,
276431-276823,277233-277238
Length = 554
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +3
Query: 288 PDEGFSLFAFHGKLNEEMEGLEAGHWSRDITKPKNGRWIFRDRNAALKIG 437
PD+ + F+G+ +E +E + ++ +IT P + +W F +R +L G
Sbjct: 115 PDQFTAFSNFNGQSSEHLETAKGANYMDEIT-PISRQWCFDNRGPSLPRG 163
>01_01_0099 - 751627-752126,752866-753056,753188-753945
Length = 482
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 190 VLYILVTDVVFYLVR*V*LNTACKMFTCE*YVRNATYP 77
VL +LV D + L C FTC ++RNA+YP
Sbjct: 22 VLAVLVPDAGGRRHHQIQLQPECPTFTCGAHLRNASYP 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,349,092
Number of Sequences: 37544
Number of extensions: 543093
Number of successful extensions: 1490
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1488
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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