Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_J07
         (874 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family ...    32   0.62 
AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical ...    29   5.7  
AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical...    29   5.7  
AF201079-1|AAF25647.1|  279|Caenorhabditis elegans VAB-2 protein.      29   5.7  
AC024759-9|AAK68436.1|  279|Caenorhabditis elegans Variable abno...    29   5.7  

>AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family
           protein 31 protein.
          Length = 747

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 392 LNYILKLTSRLNNTSIYGVRFKDHFPMALAEPRTSIAGPALTMP 261
           L ++L L+  L   S Y +  K HFP       TS+ GPA+ +P
Sbjct: 610 LEHLLNLSHHLCRFSEYNLFVKAHFPRGSYGSLTSMTGPAVEIP 653


>AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical
            protein Y57A10A.1 protein.
          Length = 1342

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 183  EHDQCCSRAQVEDLQEN*KNGQEHP*RHRQSGPGDRGPR 299
            E   C S  +   L EN KN    P RH+Q+G  D+  +
Sbjct: 1052 ERTSCPSSKKRPKLAENEKNAASPPTRHQQNGSKDKNEK 1090


>AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical
            protein Y57A10A.1 protein.
          Length = 1342

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 183  EHDQCCSRAQVEDLQEN*KNGQEHP*RHRQSGPGDRGPR 299
            E   C S  +   L EN KN    P RH+Q+G  D+  +
Sbjct: 1052 ERTSCPSSKKRPKLAENEKNAASPPTRHQQNGSKDKNEK 1090


>AF201079-1|AAF25647.1|  279|Caenorhabditis elegans VAB-2 protein.
          Length = 279

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 196 HWSCSKPAPERRRRIGSLRNSL*VYLNSNADVKT-QAALY*SLDVHYQECQK 44
           +W+ + P  ER   IG   + +  + + N+D  T Q+ +Y   +  Y+ C++
Sbjct: 29  YWNSTNPLVERYAAIGDTLDIVCPFFDENSDELTEQSIIYRVTEEEYENCER 80


>AC024759-9|AAK68436.1|  279|Caenorhabditis elegans Variable
           abnormal morphology protein2 protein.
          Length = 279

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 196 HWSCSKPAPERRRRIGSLRNSL*VYLNSNADVKT-QAALY*SLDVHYQECQK 44
           +W+ + P  ER   IG   + +  + + N+D  T Q+ +Y   +  Y+ C++
Sbjct: 29  YWNSTNPLVERYAAIGDTLDIVCPFFDENSDELTEQSIIYRVTEEEYENCER 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,294,792
Number of Sequences: 27780
Number of extensions: 196904
Number of successful extensions: 455
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)