Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_I24
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    27   3.7  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   8.6  

>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 617 LDEHHKNRRSSQRXRNPTGL*RYQAFPXQAP 709
           L ++HKNR+S+     P GL  Y+A     P
Sbjct: 387 LQDYHKNRKSNFNKPGPDGLGLYKAVLLSGP 417


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = +1

Query: 610 RPPGRASQKSTLKSEVXKPDRTIKIPGVSPASSXCAL-LFRPCRLPXTC----PPFSLRK 774
           RPP + S  S     V K D+T  +P  SP+SS  +L L+R   +P       P  S  +
Sbjct: 235 RPPIQFSISSDYIKPVDKSDQTSNVP--SPSSSVGSLRLYRSPSIPNDVEQPQPQSSRSR 292

Query: 775 PGAFXXPT 798
           P +   PT
Sbjct: 293 PRSSTIPT 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,780,312
Number of Sequences: 5004
Number of extensions: 46066
Number of successful extensions: 104
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)