Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_I24
         (915 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical pr...    29   6.1  
Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical pr...    29   6.1  
M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.ele...    29   6.1  
Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical pr...    28   8.1  
X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit ...    28   8.1  
U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha nicot...    28   8.1  

>Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical
           protein F02A9.6 protein.
          Length = 1295

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 283 CNKQVNNNNCIHFMFQVQGEVWEVFSXINESA-NARGEAVCVL 408
           CN++ NN  C++     Q E++   + I +     RG+ VC L
Sbjct: 551 CNQECNNEECLYDGLDCQSELFRCPAHIRKHCIERRGDGVCNL 593


>Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical
           protein F02A9.6 protein.
          Length = 1295

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 283 CNKQVNNNNCIHFMFQVQGEVWEVFSXINESA-NARGEAVCVL 408
           CN++ NN  C++     Q E++   + I +     RG+ VC L
Sbjct: 551 CNQECNNEECLYDGLDCQSELFRCPAHIRKHCIERRGDGVCNL 593


>M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein (
           C.elegans glp-1 gene,complete cds. ).
          Length = 1295

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 283 CNKQVNNNNCIHFMFQVQGEVWEVFSXINESA-NARGEAVCVL 408
           CN++ NN  C++     Q E++   + I +     RG+ VC L
Sbjct: 551 CNQECNNEECLYDGLDCQSELFRCPAHIRKHCIERRGDGVCNL 593


>Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical
           protein T08G11.5 protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 543 SHVLSCVIXLILWITVLPPLSELIPLAA 460
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit of
           nicotinic acetylcholinereceptor protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 543 SHVLSCVIXLILWITVLPPLSELIPLAA 460
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit precursor
           protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 543 SHVLSCVIXLILWITVLPPLSELIPLAA 460
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,934,690
Number of Sequences: 27780
Number of extensions: 294648
Number of successful extensions: 675
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)