Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_I23
(885 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.88
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom... 28 2.0
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom... 27 3.6
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 27 3.6
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 4.7
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 27 4.7
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.7
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 26 6.2
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 6.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 8.2
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 26 8.2
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 29.1 bits (62), Expect = 0.88
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +1
Query: 568 AATTPSRSATRSEPWPKPWTRRSSLPRGFSSSTGKSLKTATSSTMPRSLNTSRRXS 735
+++TPS S++ S P + +SS SSS+ S K+++SS+ ++S S
Sbjct: 150 SSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSS 205
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = +1
Query: 568 AATTPSRSATRSEPWPKPWTRRSSLPRGFSSSTGKSLKTATSSTMPRS 711
++++PS S+++S K + SS + SSS+ S +++SS+ +S
Sbjct: 161 SSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKS 208
>SPAC1556.02c |sdh1||succinate dehydrogenase
Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 27.9 bits (59), Expect = 2.0
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Frame = +2
Query: 185 GVCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLRPIQGQPRCSERTE--GIS 358
G+ CL GC G G +L+ + R + A R + + E E G+
Sbjct: 292 GIYGAGCLITEGCRGEGGYLLNSKGERFMERYAPTAKDLASRDVVSRAMTVEIREGRGVG 351
Query: 359 LTVFETFLPLS--PVGLLLQQLP 421
+L LS P +L ++LP
Sbjct: 352 PEKDHCYLQLSHLPAEILKERLP 374
>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 199 SLPVWLWVCWPRKTHAIRTSTKDA 270
++P+ LW+C P T + TST+DA
Sbjct: 94 NVPITLWICAP-LTAILSTSTRDA 116
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 103 KAVLSTYVKRTCYFFENS 156
KAV YV+R CY+ EN+
Sbjct: 271 KAVFDKYVERECYYSENA 288
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +1
Query: 568 AATTPSRSATRSEPWPKPWTRRSSLPRGFSSSTGKSLKTATSSTMPRSLNTSRRXS 735
++++PS S+T + P + SS SSS+ S +++SS+ S ++S S
Sbjct: 140 SSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 195
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/65 (26%), Positives = 27/65 (41%)
Frame = +2
Query: 572 QLHRRGRPRDRSPGQSLGHAEAACREDFLHPQGSH*KQRPPPRCRDHSIHRGGXRESASR 751
Q +R RP +PG+ +G+ DF +R R RD + +R R S +
Sbjct: 175 QKAKRSRPHSPTPGKYMGYDRRRNSRDFPSNNKDGGYRRNNYRDRDSNRYRNSYRPSRPQ 234
Query: 752 YDSXP 766
+ P
Sbjct: 235 REHSP 239
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 26.6 bits (56), Expect = 4.7
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 580 PSRSATRSEPWPKP-WTRRSSLPRGFSSSTGKSLKTATSSTMPRSLNTSRRXS 735
P R +T KP W+RR + GFSS + + TSS + SR S
Sbjct: 645 PVRPSTALTDKRKPSWSRRLAAAIGFSSGSPEKKHVITSSDAGHQRSKSRSFS 697
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -3
Query: 673 TSLWMKKILSASCFCVSKALARAPISWPTS 584
+++W I A C C++ ++A ++PTS
Sbjct: 95 SAVWCWLIAGAGCMCIALSVAELVSAYPTS 124
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 518 GGKMDFSSHTTLKGDKGQQLHRRGRPR 598
G ++DFS+ T + GD L G PR
Sbjct: 348 GKRVDFSARTVITGDPNLSLDELGVPR 374
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 8.2
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 580 PSRSATRSEPWPKPWTRRSSLPRGFSSSTGKSLKTATSSTMP 705
P AT S+P P+P T S+ G SSS S + S + P
Sbjct: 273 PPPPATPSQP-PRPPTNASTRSTGTSSSMAHSYDSPPSPSSP 313
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +1
Query: 562 QGAATTPSRSATRSEPWPKPWTRRSSLPRGFSSSTGKSLKTATSSTMPRSLNTS 723
Q A + S + +R P P P ++ P +S+ ++++MP LN +
Sbjct: 63 QAATVSESANVSRPTPAPVPPAGNTNTPTTSNSNQNLENNVTSAASMPAILNAA 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,195,537
Number of Sequences: 5004
Number of extensions: 64692
Number of successful extensions: 193
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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