Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_I22
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    30   0.52 
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    27   2.7  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    27   4.8  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    27   4.8  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   4.8  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    26   6.3  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   6.3  

>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
 Frame = +1

Query: 79  RFHSANANRIKMFPLRRVVGNKILEQWRSQATAAVG--AKTQMKAYSTE-VTPRPLTMLT 249
           R +  N NR  +  L   V  K   QWRSQ    +   AKT  + + T+ +  RPL +  
Sbjct: 35  RKYDLNINRDSLQELASFVSKKCGSQWRSQCEPLLDEIAKTWKRVHETQPIVTRPLLIPV 94

Query: 250 EDELAMRETIRKLATEQISPL 312
              L +   +R  +  ++  L
Sbjct: 95  LANLNVPHEVRVSSLARVQTL 115


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = +1

Query: 88  SANANRIKMFP-LRRVVGN-KILEQWRSQATAAVGAKTQMKAYSTEVTPRPLTM-LTEDE 258
           + NAN  ++ P L+  +   K+LEQ   +    V  + + K Y++    RPL+  +TE  
Sbjct: 439 NGNANPSRLNPALKNYMEELKLLEQQNKKRLLLVSQEKERKGYTSASPDRPLSQTITESS 498

Query: 259 LAMRETIRKLATE 297
           +A  ++    +T+
Sbjct: 499 VAKTKSTTPKSTD 511


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 159 EVPGNGCRWSKDSDESIQHRSNPTTFD 239
           +V GN  +  K SDE ++ R+ P TF+
Sbjct: 510 DVLGNAHKKFKGSDEVVESRAGPVTFE 536


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/58 (20%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +1

Query: 142 KILEQWRSQATAAVGAKTQMKAYSTEVTPRP-LTMLTEDELAMRETIRKLATEQISPL 312
           +++ +W+      +    + +A    +T +P +T+  E+E  ++ET+ ++ +E+I P+
Sbjct: 670 QLISEWQKYRDEVIARVAEERA----ITGQPAITVPAEEEEIIQETVEEVISEEIEPV 723


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 186 SKDSDESIQHRSNPTTFDHADRR*TRHEGNNTETSDRTNKSACEEN 323
           SK      Q  +N TT +  ++      G++TET + TNK A  E+
Sbjct: 561 SKKKTSKAQQEANSTTAEGKEKL----SGDSTETGNSTNKEASTED 602


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +2

Query: 734 MTNADPS--KGYKGITCFIVERETPGLSVAKPENKLGIRASG 853
           +T ADP   + YK +  F   +  PG  V  P+  + I A G
Sbjct: 117 LTEADPDDVRQYKNLAEFFTRKLKPGARVIDPDAPIVIPADG 158


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 540 RRTKKEIFNETLHGICWQFLSHRA-QLRIRC 629
           +++ K++FN  L G C   LSHR  Q  + C
Sbjct: 870 KKSIKDVFNVLLEGRCSLILSHRCFQYMVLC 900


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,677,574
Number of Sequences: 5004
Number of extensions: 76140
Number of successful extensions: 214
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)