Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_I20
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    26   0.52 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    26   0.52 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   2.1  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   3.7  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   4.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.5  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = -1

Query: 657 CVGCIFALLISKASWYAFCESSTTECLVSPVATSARY 547
           C  CI   + S   W  +C S+   C+ +  +   R+
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRF 71


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = -1

Query: 657 CVGCIFALLISKASWYAFCESSTTECLVSPVATSARY 547
           C  CI   + S   W  +C S+   C+ +  +   R+
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRF 519


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -3

Query: 328 GTYDILISN*KEVPLLVAKFDAGFRHFLHRGRHV 227
           G +D+ + + + V  L     A F    HRG H+
Sbjct: 183 GAFDVTLESGERVTFLDTPGHAAFISMRHRGAHI 216


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 706 DIKFARQGVSTRQTGFRRCHRRTGHIERRSYKDSTLIMQL 825
           D    + G  +R   F R  R+ GH   +++  STL++ L
Sbjct: 177 DYMLEKSGNFSRLVVFFRFERQIGHHLIQTFAPSTLVVML 216


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 812 NVESLYDLRSMCPVRRWHRRKPVWRV 735
           N +S  DLRS     R   R+ VW +
Sbjct: 20  NEDSKIDLRSRTKEERLQHRREVWLI 45


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 13/63 (20%), Positives = 32/63 (50%)
 Frame = +2

Query: 362 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDY 541
           E++T  +E+  +M K Y   ++KE +++  ++      + +  A   ++   + K K D+
Sbjct: 441 EKRTIENEQLNRMYKSYPNYIDKETKDMNLEISTRPKSNTVENACVLKNTEIF-KDKSDW 499

Query: 542 YRY 550
           + Y
Sbjct: 500 FDY 502


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,191
Number of Sequences: 438
Number of extensions: 4838
Number of successful extensions: 32
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)