Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_I14
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.67 
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    27   2.7  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    27   3.6  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   4.7  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   4.7  
SPCC569.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   8.2  

>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
 Frame = +1

Query: 142 GVVNSHSSNGVLGRRQILRDIITSIKPKNCSKFSS---KNITGXYKDDADRELHYQSFKK 312
           GV   HSS+    RR    D+ +S   +     SS   +       DD+D E  Y+  + 
Sbjct: 324 GVSKGHSSST---RRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSERSYRRVRD 380

Query: 313 HLAEINQLNEKNPYTTFGINKF-ADYTPEEQQSRL 414
                 +L++KN Y+TF  ++F    TP   QS L
Sbjct: 381 QYLSKPRLSDKNRYSTF--SEFPGQGTPSASQSNL 413


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
 Frame = +1

Query: 166 NGVLGRRQILRD---IITSIKPKNCSKFSSKNITGXYKDDADRELHYQS---FKKHLAEI 327
           N +L R+Q   D     +S++  +    SS +    + DD D + + ++   F+K +   
Sbjct: 190 NSILHRKQNRMDPKASFSSVEQSSLRTPSSAHNDDGFWDDFDIDFNNETESIFRKKIRSP 249

Query: 328 NQLNEKNPYTTFGIN 372
           N +N+K+PY +  I+
Sbjct: 250 NTINQKHPYISSTIS 264


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 109 IHCAKHEFRQCGVVNSHSSNGVLGRRQILRDIITSI 216
           I C  H   Q   VNS  SN  L R Q L+ ++ +I
Sbjct: 492 IRCVFHNIMQIHAVNSRLSN-ALNRTQTLQPVVNTI 526


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/33 (51%), Positives = 20/33 (60%)
 Frame = -1

Query: 429 RQPQSQPALLFLRSIISKFVNAKRSIWILLVQL 331
           R  ++Q ALL L  I SKF N   + W LLVQL
Sbjct: 866 RDFRAQLALLVLFWISSKFGNIIDASWPLLVQL 898


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1347

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 220  PKNCSKFSSKNITGXYKDDADRELHYQSFKKHLAEINQLNE 342
            PKN    S   I    K++ + +    SF+K + EI Q  E
Sbjct: 1229 PKNSQPLSISEIMTEQKEEIESQKRRSSFRKTIEEIQQEEE 1269


>SPCC569.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 171 RPRXETDTPRHYYLNQAKELFEIFVKEH 254
           RP   TDT  HYYL     + E  +  H
Sbjct: 57  RPLYTTDTRTHYYLKNCFRILEWEIVSH 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,716
Number of Sequences: 5004
Number of extensions: 56033
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)