Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_I07
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    29   0.62 
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.82 
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    29   0.82 
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    29   1.1  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    27   3.3  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    27   3.3  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   3.3  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   4.4  

>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 440 NFLRYSLLPTASTRERGRLEVRSALGRVHVICTVVDRFV 324
           NF    ++P  STR+R  + +R   G +H+IC   D  +
Sbjct: 756 NFRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGADTVI 794


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = +3

Query: 234 HPGHGNGYEPIDNRPYIVNPPKD-YNPNG-NGYEPIDNGAYYVDPPQG---RPYFKPTPF 398
           H G+   Y   +++ Y   P +D YN N  N Y PI N  Y+++   G    PYF     
Sbjct: 97  HYGNNRTYYK-NSQGYRRKPKRDDYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNA 155

Query: 399 PG 404
           PG
Sbjct: 156 PG 157


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +3

Query: 210 HVNVVDNNHPG-HGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFK 386
           H N+++N     H   + P    P     PK   PN N  +P  NG   + PP    Y K
Sbjct: 20  HKNMLENEEEASHSQLFTPCPVPPSF---PKASKPNSN--QPYPNGPVCIYPPNIYLYAK 74

Query: 387 PT 392
           PT
Sbjct: 75  PT 76


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +1

Query: 253 ATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSSLPLSL 402
           A+ L +++ T+ + P  +T  ET ++ S+    T T+  +  TSS P+SL
Sbjct: 234 ASTLESSSLTNTVSPTESTFYETKSSTSSVP--TQTIDSSSFTSSTPVSL 281


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +1

Query: 247 ETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSSLPLS 399
           ET T  +    T   + +TTT+      + T +  T T P  + T+ LP++
Sbjct: 105 ETTTTPMVETTTITPMVETTTITPMVEAMITLMEETMTTPMEETTTILPMA 155


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 20/71 (28%), Positives = 26/71 (36%)
 Frame = +3

Query: 204 PGHVNVVDNNHPGHGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYF 383
           P   + +  NHP   + + P    P I  PP +Y PN     P  +     DP       
Sbjct: 270 PASADRLQKNHPVQSSNFNPYTPAPSITVPP-NYIPNTAMMGPSYSSFGDTDPRTYPAGM 328

Query: 384 KPTPFPGARGG 416
            P P   AR G
Sbjct: 329 GPNP-TAARNG 338


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
 Frame = +1

Query: 244 TETATNLLTTAR-TSLILPKTTTLMETATNL--STTVHITWTLP 366
           TET+T+ +T+   TS++ P +T+   T T +  +T+++ T T+P
Sbjct: 54  TETSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVP 97


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 326  RTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 433
            R + ++C  R P  RP  +     PW + +  K I+
Sbjct: 1280 RDFIEQCFERDPEQRPRAVDLLTHPWITDFRKKTII 1315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,322
Number of Sequences: 5004
Number of extensions: 48833
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)