Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_I05
(885 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc... 108 1e-24
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch... 107 2e-24
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 31 0.22
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 27 2.7
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 27 2.7
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom... 27 3.6
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 4.7
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 26 8.2
>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
L17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 108 bits (259), Expect = 1e-24
Identities = 47/82 (57%), Positives = 62/82 (75%)
Frame = +2
Query: 329 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMS 508
RWP KS +F LL+NAE+NA+ K LD+D+L+I H+QVN AP RRRTYRAHGR+ Y+S
Sbjct: 82 RWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLS 141
Query: 509 SPCHIEVCLSEREDAVARVAPT 574
SP HIE+ ++E E+AV + T
Sbjct: 142 SPSHIEIIVAEEEEAVPKANDT 163
Score = 93.9 bits (223), Expect = 3e-20
Identities = 45/80 (56%), Positives = 53/80 (66%)
Frame = +1
Query: 85 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 264
M RYS P K KARG+ LR HFKN+ E A I M L++A +L NV E K+ +PF
Sbjct: 1 MVRYSASPALETKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPF 60
Query: 265 RRFNGGVGRCAQAKQFGTTQ 324
RRFNGGVGR AQ K+FG TQ
Sbjct: 61 RRFNGGVGRTAQGKEFGVTQ 80
>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 187
Score = 107 bits (258), Expect = 2e-24
Identities = 47/82 (57%), Positives = 61/82 (74%)
Frame = +2
Query: 329 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMS 508
RWP KS F LL+NAE+NA+ K LD+D+L+I H+QVN AP RRRTYRAHGR+ Y+S
Sbjct: 82 RWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLS 141
Query: 509 SPCHIEVCLSEREDAVARVAPT 574
SP HIE+ ++E E+AV + T
Sbjct: 142 SPSHIEIIVAEEEEAVPKANDT 163
Score = 93.1 bits (221), Expect = 5e-20
Identities = 45/80 (56%), Positives = 53/80 (66%)
Frame = +1
Query: 85 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 264
M RYS P K KARG+ LR HFKN+ E A I M L++A +L NV E K+ +PF
Sbjct: 1 MVRYSAAPALETKCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPF 60
Query: 265 RRFNGGVGRCAQAKQFGTTQ 324
RRFNGGVGR AQ K+FG TQ
Sbjct: 61 RRFNGGVGRTAQGKEFGVTQ 80
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 31.1 bits (67), Expect = 0.22
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +2
Query: 299 KQSSLAQHRXRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYR 478
K S +QH+ PK SA LL +LR+ N TL++ + D I C +R+ R
Sbjct: 151 KLGSTSQHQIATPKSSAS-LLNILRSLHDEQKN-TLNISSVKQDRITEANPTCEKRKPSR 208
Query: 479 A 481
+
Sbjct: 209 S 209
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 409 RGQASHRPHSGKSRALPTQTYIPCSRS---HQPLHVVSLPHRSMS 534
+ Q+ S K RA +T + ++S HQ +H +S PH S S
Sbjct: 331 QAQSPFLKKSDKERANLNKTMVSINKSINIHQSIHEISCPHHSSS 375
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 145 NLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEK-KECI 258
NLRV K T ++ +++ P + RYLK ++E K+C+
Sbjct: 102 NLRVSKKKTSKSDVSMAGFPFFKLDRYLKILVEDLKKCV 140
>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 317 QHRXRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVI 427
+H WP EF+ + +++AE N+ + D +L+I
Sbjct: 4 EHHSPWPDSLKEFIGRCIQDAEENSQPELEDEVKLLI 40
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 322 VLCQTALLEHSDQRRR*SDGMEYTLSFQ 239
++C TA+L+H D RR G+ + L F+
Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 152 VFTLRTHMRPQWQSGRCRSVVL 217
V+ R + W+ GRCR VVL
Sbjct: 248 VYAERCRVECNWRHGRCRQVVL 269
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,777
Number of Sequences: 5004
Number of extensions: 53702
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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