Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_I03
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    30   0.50 
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    28   1.5  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    26   6.2  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   6.2  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    26   8.2  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    26   8.2  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    26   8.2  

>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 745 ENAFYDIAQNYYHHEAKTLSSTETTSINXH 834
           +N  +  A NY  HE +TL ST T S++ H
Sbjct: 315 QNDCFSNAMNYLEHEYETLVSTFTLSVSEH 344


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 698 KQGFRLDLTSSTKCLGTLGSKHVL--RRRRRLPTLYDYYS 585
           +Q FRL++++S KC  T+    +      R L T YDY S
Sbjct: 38  EQAFRLNVSNSKKCFDTISGHRITLPTNARGLFTGYDYES 77


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
 Frame = +3

Query: 420 LKKNWIHKRVSLIPAVIVIFYDMDWNDTQWNEKIIECAS-KVQSIRAAVEGHATRVAVVV 596
           + +++ H +++ I     +  D D N T     I++ A    Q    +V     R+    
Sbjct: 20  IAQSYGHSQLTPIHIAAALLSDSDSNGTTLLRTIVDKAGGDGQKFERSVTSRLVRLPA-- 77

Query: 597 IQSRQSPPPSEYMLGAERAQALCAACEIQ 683
               Q PPP +  L  E A+ L  A E+Q
Sbjct: 78  ----QDPPPEQVTLSPESAKLLRNAHELQ 102


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 447  VSLIPAVIVIFYDMDWN 497
            ++L  A  VIFYD DWN
Sbjct: 1511 INLTAADTVIFYDSDWN 1527


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = +3

Query: 246 SGLDAVNNAVHKEILDAFANNRRADRTPVRFKLLNNTFE-FPVVKPKRNSYEWYIPKGIL 422
           SG++   + ++   L   ANN         F+   +T E FP+  P  +S  +   +   
Sbjct: 413 SGINTPVSGINYPNLGFSANNSVQSLVSEIFRHPTHTDEDFPLPSPSLSSLLFPTLRNFA 472

Query: 423 KKNWIHKRVSL--IPAVIV 473
           KK+W  K + +  +P+V++
Sbjct: 473 KKSWYEKLMDVLAVPSVLI 491


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
            Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 447  VSLIPAVIVIFYDMDWN 497
            ++L  A  VIFYD DWN
Sbjct: 1073 INLTGADTVIFYDSDWN 1089


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
 Frame = +3

Query: 435 IHKRVSLIPAVIVIFYDMDWNDT---QWNEKIIECASKVQSIRAAVEGHATRVAVVVIQS 605
           I +RV + PAV+   Y      T   Q     I  + ++      ++    R +  VI  
Sbjct: 472 IPQRVQVSPAVLAKNYLAPGQTTALAQMRAVFIYISERITFTNQTLDNDELRTSTQVISE 531

Query: 606 RQSPPPSEYMLGAERAQALCAACEI 680
            Q  P    +L  E  QAL   CE+
Sbjct: 532 GQGTPFEVALLVKEMLQALDLWCEV 556


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,648,183
Number of Sequences: 5004
Number of extensions: 76968
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)