Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_I03
         (885 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical pr...   124   6e-29
AC025727-5|AAG23385.2|   89|Caenorhabditis elegans Hypothetical ...    28   7.7  
AB042633-1|BAA95694.1|   89|Caenorhabditis elegans bladder cance...    28   7.7  

>U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical
           protein B0412.3 protein.
          Length = 1107

 Score =  124 bits (300), Expect = 6e-29
 Identities = 66/168 (39%), Positives = 101/168 (60%)
 Frame = +3

Query: 222 KPLALIGLSGLDAVNNAVHKEILDAFANNRRADRTPVRFKLLNNTFEFPVVKPKRNSYEW 401
           +PL L+ LSGL+ VN   H  I++ F  NR AD+ P+  ++++   + P   PKR +   
Sbjct: 13  RPLQLVFLSGLNPVNKPAHNSIVNVF-RNRTADKPPLHIRVVSGELDIP---PKRETGSG 68

Query: 402 YIPKGILKKNWIHKRVSLIPAVIVIFYDMDWNDTQWNEKIIECASKVQSIRAAVEGHATR 581
              KGIL++ W  K +  +PA+IV+F D++W+   W EK  E  SKV SIR ++  H T+
Sbjct: 69  ---KGILRREWPQKYLDKVPALIVVFIDLEWDHPSWEEKKTEAESKVASIRGSLR-HGTK 124

Query: 582 VAVVVIQSRQSPPPSEYMLGAERAQALCAACEIQSKSLFVLPHGDHLM 725
           +A+V+IQ + +       L A+RA  LC AC + SK LF+LP  D+L+
Sbjct: 125 IALVLIQQKSTSISDN--LAADRAHELCQACSLSSKQLFILP-ADNLL 169



 Score = 37.5 bits (83), Expect = 0.013
 Identities = 20/48 (41%), Positives = 27/48 (56%)
 Frame = +1

Query: 742 LENAFYDIAQNYYHHEAKTLSSTETTSINXHQYLFVRHQFKLGYLNEL 885
           LE AF+++ Q +Y    KT+ S      N    L VR QFKL +L+EL
Sbjct: 183 LELAFHELCQAFYQQRLKTIRSRNIP--NNSPALVVRQQFKLAFLSEL 228


>AC025727-5|AAG23385.2|   89|Caenorhabditis elegans Hypothetical
           protein Y73E7A.6 protein.
          Length = 89

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 396 EWYIPKGILKKNWIHKRVSLIPAVIVIFY 482
           +W IP  ++ K+WIH    +  AV + FY
Sbjct: 5   QWLIPVLLIPKHWIHPMFLVEQAVFMWFY 33


>AB042633-1|BAA95694.1|   89|Caenorhabditis elegans bladder cancer
           related protein protein.
          Length = 89

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 396 EWYIPKGILKKNWIHKRVSLIPAVIVIFY 482
           +W IP  ++ K+WIH    +  AV + FY
Sbjct: 5   QWLIPVLLIPKHWIHPMFLVEQAVFMWFY 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,249,089
Number of Sequences: 27780
Number of extensions: 436657
Number of successful extensions: 959
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)