Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_I03
         (885 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.6  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 754 FYDIAQNYYHHEAKTLSSTETT 819
           FY  +Q YY H A   SS   T
Sbjct: 203 FYTTSQQYYGHFAGNFSSISIT 224


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +3

Query: 492 WNDTQWNEKIIECAS-KVQSIRAAVEGHATRV 584
           +ND  WN   ++C+   V+ I   +   AT V
Sbjct: 768 YNDRTWNTNAVDCSGLGVEEIPRRIPMDATEV 799


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = +3

Query: 435 IHKRVSLIPAVIVIFYDMDWND---TQWNEKIIEC 530
           +H R   + AV+  +YD D N     + N  I++C
Sbjct: 90  VHSRDVNVRAVVAQYYDTDVNKEYAIRGNSAILKC 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,134
Number of Sequences: 438
Number of extensions: 5143
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)