Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_H24
         (908 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    25   0.72 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   0.72 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    25   0.72 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   2.2  

>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 25.4 bits (53), Expect = 0.72
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 27  IGXPLKIYWKNGFLCLKSRTLNFLNQHSSFYTCV 128
           I  P+K+ W+  + CLK   L F    + ++T V
Sbjct: 244 ITCPIKVSWRGNYSCLKV-DLIFTRDRAFYFTTV 276


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 25.4 bits (53), Expect = 0.72
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 27  IGXPLKIYWKNGFLCLKSRTLNFLNQHSSFYTCV 128
           I  P+K+ W+  + CLK   L F    + ++T V
Sbjct: 295 ITCPIKVSWRGNYSCLKV-DLIFTRDRAFYFTTV 327


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 25.4 bits (53), Expect = 0.72
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 27  IGXPLKIYWKNGFLCLKSRTLNFLNQHSSFYTCV 128
           I  P+K+ W+  + CLK   L F    + ++T V
Sbjct: 244 ITCPIKVSWRGNYSCLKV-DLIFTRDRAFYFTTV 276


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = +3

Query: 66  LCLKS-RTLNFLNQHSSFY 119
           LC K  RTLN LN H S Y
Sbjct: 406 LCHKVFRTLNSLNNHKSIY 424


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,349
Number of Sequences: 438
Number of extensions: 3692
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)