Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_H23
(881 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_02_0016 - 11805853-11806232,11806565-11806610 31 1.2
06_02_0021 + 10681730-10681816,10681868-10681913,10682296-106823... 31 1.2
08_02_0120 + 12788510-12788680,12788908-12789342 30 2.1
02_05_0685 + 30891289-30891810,30892740-30892915,30893379-308934... 29 3.7
02_02_0574 - 11701359-11701460,11701469-11701570,11701725-117019... 29 3.7
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329... 29 3.7
05_03_0081 + 8249692-8249694,8249902-8250273,8250781-8251158 29 4.9
03_01_0541 + 4064491-4064715,4065018-4065070,4065190-4065226,406... 29 4.9
02_03_0382 + 18352508-18352841,18353817-18354028,18354190-183542... 29 6.5
10_08_0307 - 16654691-16654890,16656230-16656698 28 8.6
>07_02_0016 - 11805853-11806232,11806565-11806610
Length = 141
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 173 LAVPKLEQNHKH*TQGNLHSVTLSSTAELYCTHTHSFQDCIK 48
L + +L+ N K QG + ++ ++T E+Y HS DC K
Sbjct: 81 LLMKRLDNNEKDAKQGTVKALDFNTTCEVYGNTGHSGMDCPK 122
>06_02_0021 +
10681730-10681816,10681868-10681913,10682296-10682388,
10682802-10682888,10683297-10683331
Length = 115
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/50 (40%), Positives = 23/50 (46%)
Frame = +3
Query: 78 RTI*LRSRGQRYRMKIALCLVLVILFQFRNCQEIPEEVSSEDEKLSEGEK 227
RT LR Q Y KIA C + + F PE V +DEK E EK
Sbjct: 13 RTYNLRKL-QLYITKIAFCYITKVTFVNTFDLACPESVQDDDEKRQESEK 61
>08_02_0120 + 12788510-12788680,12788908-12789342
Length = 201
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 173 LAVPKLEQNHKH*TQGNLHSVTLSSTAELYCTHTHSFQDCIK 48
L + +L+ N K QG + ++ +T E+Y HS DC K
Sbjct: 114 LLMKRLDNNEKDNKQGTVKALDFHTTCEVYGNTGHSGMDCPK 155
>02_05_0685 +
30891289-30891810,30892740-30892915,30893379-30893492,
30893846-30893954,30894038-30894124,30895137-30895736,
30895823-30896101,30896808-30896897,30897151-30897507,
30897924-30898160,30898733-30898953,30899856-30899955,
30900042-30900188,30900287-30900385
Length = 1045
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 806 RVWEXQIARXFXDLFVHRGXDGGISFLEDVRLI 708
++WE + +F RG D + +LED RL+
Sbjct: 346 QLWENDMLPAIWFIFSRRGCDAAVEYLEDCRLL 378
>02_02_0574 - 11701359-11701460,11701469-11701570,11701725-11701922,
11702090-11704052,11705312-11706126
Length = 1059
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +1
Query: 538 TGLRVTANAGLQVERDGKIRAENIVMDLSASNIAVNLENAEIISGFINTIGPFIFDSINL 717
+G+ + A A +++DG+ ++ L S ++L+ E + I T+GPF S +
Sbjct: 959 SGIIIDALAFSYLDKDGERHTTSLWGGLGGSVQLIDLDEREFLMEVIGTVGPFNVLSEAI 1018
Query: 718 TS 723
TS
Sbjct: 1019 TS 1020
>02_01_0459 +
3298780-3298788,3298900-3299037,3299174-3299207,
3299528-3299531,3299814-3299949,3300034-3300090,
3301689-3301786,3301876-3301947,3302056-3302228,
3302552-3302698,3303113-3303336,3305300-3305306,
3305634-3305800,3306033-3306068,3306787-3307004,
3307115-3307172,3307761-3307842,3308045-3308207,
3308594-3308598,3308700-3308885,3308969-3309548,
3309642-3309774,3309880-3309948,3310184-3310395,
3310654-3310891,3311228-3311386,3311501-3311926,
3312010-3312447,3312593-3312712,3312784-3313266,
3313471-3314009,3314178-3314667,3314836-3314904,
3315735-3315839,3315940-3316158,3316254-3316508,
3316602-3316651,3317175-3317284,3317372-3317454,
3317560-3317772,3317870-3318040
Length = 2391
Score = 29.5 bits (63), Expect = 3.7
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = +3
Query: 420 DIGAMEAHAVMTLEKLQARGNYTFANVVQFGSGPVHCSHNR---TEGDSERGPSSRARR* 590
D+G+ HA T A G++ V++FGS P+ S + D+ + P+ R R
Sbjct: 487 DVGSTLRHADTTATSELAFGSFDINRVLEFGS-PLLASGGQEYDIANDNGKNPAERLARQ 545
Query: 591 NQSGKHRHGL 620
Q+ + R GL
Sbjct: 546 KQNLRRRLGL 555
>05_03_0081 + 8249692-8249694,8249902-8250273,8250781-8251158
Length = 250
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -1
Query: 173 LAVPKLEQNHKH*TQGNLHSVTLSSTAELYCTHTHSFQDCIKILRE 36
L + +LE K+ QG + ++ T E+Y HS DC++ E
Sbjct: 152 LLMNRLEDQEKNMPQGTVKALDAHITCEVYGNSGHSETDCLETREE 197
>03_01_0541 +
4064491-4064715,4065018-4065070,4065190-4065226,
4065409-4065474,4065809-4065907,4066000-4066153,
4066267-4066343,4066438-4066500
Length = 257
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3
Query: 609 RHGLIGQQHRCEPGKRRNHLRIYQ 680
RH L G+ EPGK H RIYQ
Sbjct: 150 RHPLHGETFPAEPGKSSFHCRIYQ 173
>02_03_0382 +
18352508-18352841,18353817-18354028,18354190-18354277,
18355017-18355474
Length = 363
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +3
Query: 183 EEVSSEDEKLSEGEKKLSHNILAILEHYKQPDPTGLPGAKLPDPYP 320
E+ +DEK E EK S N + E K+ DP+ L A L YP
Sbjct: 286 EKKEGDDEKEKEKEKDDS-NAAEVEEKDKEKDPSALAAANLYMHYP 330
>10_08_0307 - 16654691-16654890,16656230-16656698
Length = 222
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 184 RRCRVKMKNFRKAKKNSVIISWLFWSIINSRI 279
R C + ++ R+ K +++SW W NSR+
Sbjct: 87 RHCPLGVEKRRRVKSLLILVSWEIWKERNSRV 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,874,336
Number of Sequences: 37544
Number of extensions: 470365
Number of successful extensions: 1238
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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