Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_H22
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor |Schizo...    27   3.6  
SPBC3H7.08c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.4  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    26   8.4  

>SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 264 WDRTTMDYSVKP 299
           WDRTT+DY ++P
Sbjct: 14  WDRTTIDYDIEP 25


>SPBC3H7.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 120

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = +3

Query: 123 SWCV*TQKYTGLLIMKKNTPSEAYFQSDTPVTSRGTREWEEGRSSALWDRTTMDYSVK 296
           +WCV T  +     M          +    + S+    WE+ +SS+     ++DYS K
Sbjct: 25  TWCVMTYTFGVAGYMLGQRGLLVQHEDQVRIPSKNAHPWEDTKSSSGKSDESLDYSYK 82


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = +2

Query: 605 VVIVNTIPSFIELCLFVFRQKSYYLLLCIFWQLLV*NVIFDCFKKMSILLTKYVLLITC 781
           VV +      I + LF  R++   +++ + W L++  ++F C K   + L K ++  TC
Sbjct: 180 VVFLAQCVKVISIGLFNIRREMM-IIIWLLW-LIICCILFGCVKSGDLNLNKALIYSTC 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,753,992
Number of Sequences: 5004
Number of extensions: 84030
Number of successful extensions: 155
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)