Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_H22
(903 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0717 + 27097367-27097621,27097744-27097866,27098136-270983... 34 0.18
02_04_0628 + 24589313-24589472,24589604-24589765,24589850-245899... 33 0.41
01_06_0513 - 29944888-29945943 33 0.41
05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816... 31 1.7
09_06_0292 + 22075647-22075691,22077394-22077507,22077602-220778... 30 2.9
11_06_0201 + 21178784-21179047,21179519-21180064 29 5.1
09_02_0463 + 9586015-9586233,9586330-9586400,9587026-9587116,958... 28 8.8
08_02_0909 - 22515326-22515418,22515992-22516150,22516583-225166... 28 8.8
>03_05_0717 +
27097367-27097621,27097744-27097866,27098136-27098303,
27098393-27100072
Length = 741
Score = 33.9 bits (74), Expect = 0.18
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 101 LLFFIATVLVCVNAE-VYRSSDYEKEYPIRGLFSKRHPRDVTWDTRMGGGKVF 256
++ I VL CV +Y + E+ YPI+G +S+ +T+D R+ K+F
Sbjct: 461 VVMLILVVLTCVGTHYIYGGNGAEEPYPIKGKYSQFTLLTMTYDARLWNLKMF 513
>02_04_0628 +
24589313-24589472,24589604-24589765,24589850-24589983,
24590108-24590275,24590481-24590562,24590734-24591512
Length = 494
Score = 32.7 bits (71), Expect = 0.41
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -1
Query: 576 RLVFCDQIPS--RPYRRLRCGCSYQDPTHRSPR 484
R++ CD PS R RL C CSYQ +SPR
Sbjct: 29 RILLCDSDPSSSREVLRLLCNCSYQVTCAKSPR 61
>01_06_0513 - 29944888-29945943
Length = 351
Score = 32.7 bits (71), Expect = 0.41
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 114 SPQSWCV*TQKYT-GLLIMKKNTPSEAYFQSDTPVTSRGTREWEEGRSSALWD 269
SP+S T +Y G + P+ A + P +RGT EW EG + AL D
Sbjct: 57 SPRSKRRRTDRYAQGFEFAPRPAPATATATAPAPTPARGTPEWSEGSTFALLD 109
>05_03_0076 +
8164466-8164511,8164643-8164698,8165529-8165867,
8165938-8166012,8166674-8166846,8168697-8168795,
8169002-8169161,8169321-8169464,8169551-8169723,
8169796-8169991,8170061-8170258,8170864-8171016,
8171838-8171959,8172037-8172136,8172221-8172316,
8172400-8172530,8173717-8173819,8174373-8174555,
8174632-8174724,8174818-8174853,8175672-8175773,
8176310-8176472,8176557-8176678,8176994-8177158,
8177667-8177849,8178679-8178831,8179136-8179288,
8179373-8179444,8179530-8179664,8179739-8179800,
8179999-8180096,8180628-8180737,8180832-8181005,
8181092-8181157,8181847-8181915,8181989-8182099,
8182418-8182558,8182638-8182766,8182864-8183029,
8183174-8183388,8184883-8185089,8185501-8185572,
8185897-8186010,8186090-8186281,8186489-8186569,
8186654-8186728,8186812-8186878,8187292-8187452,
8187943-8188116,8188209-8188337,8188421-8188504,
8188589-8188650,8188728-8188800,8189008-8189142,
8189790-8189960,8190054-8190319,8190440-8190458
Length = 2448
Score = 30.7 bits (66), Expect = 1.7
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +2
Query: 95 SKLLFFIATVLVCVNAEVYRSSDYEKEYPIRGLFSKRHPRDVTWDTRMGGGKVFGTLGQN 274
SK +AT+ + + Y S Y + P+ GL K ++ W TR+ KV G +G
Sbjct: 737 SKREVAVATLGQVIQSTGYVISPYNEYPPLLGLLLKLLNGELEWSTRLEVLKVLGIMGAL 796
Query: 275 D 277
D
Sbjct: 797 D 797
>09_06_0292 +
22075647-22075691,22077394-22077507,22077602-22077841,
22077926-22078003,22078094-22078162,22078420-22078545,
22079108-22079188,22079272-22079460,22079597-22080434,
22082290-22082411,22082482-22082701,22082910-22083055,
22083260-22083566,22083886-22084136,22084294-22084533,
22084930-22085238
Length = 1124
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +3
Query: 240 EEGRSSALWDRTTMDYSVKPVTTERFSMMTAVS*PARLTAPGXLGPGGDSTNYGGRLDWA 419
E R+S +WD+ Y P T + + PAR T P G+S+N+G L A
Sbjct: 505 ENRRASVVWDQEAGRYVSVPAQTRA---VPGLDLPAR-TPRFLANPTGESSNHGKNLAPA 560
Query: 420 NKNAQA 437
N ++ A
Sbjct: 561 NASSSA 566
>11_06_0201 + 21178784-21179047,21179519-21180064
Length = 269
Score = 29.1 bits (62), Expect = 5.1
Identities = 23/65 (35%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Frame = +3
Query: 315 FSMMTAVS*PARLTAPGXLGPGGDSTNYGGRLDWANKNAQAAID--INRQIGGRSGMTAS 488
F AVS PA L A LGPGG + G L A A A + R G G
Sbjct: 72 FPAAEAVSSPAELPATQLLGPGGGGVSPRGWLALARTRAPAIAGGFLARGAPGGRGGVVF 131
Query: 489 GSGVW 503
G W
Sbjct: 132 PDGSW 136
>09_02_0463 +
9586015-9586233,9586330-9586400,9587026-9587116,
9587322-9587331,9587796-9587863,9588695-9588847,
9588931-9589566
Length = 415
Score = 28.3 bits (60), Expect = 8.8
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 677 LLLCIFWQLLV*NVIFDCFKKMSILLT 757
L+LC+ W+LL ++ CF+ ++ +LT
Sbjct: 12 LMLCLAWKLLKNLSVYQCFRHLNKVLT 38
>08_02_0909 -
22515326-22515418,22515992-22516150,22516583-22516658,
22517980-22518141,22518826-22519259,22519723-22521414
Length = 871
Score = 28.3 bits (60), Expect = 8.8
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Frame = +3
Query: 354 TAPGXLGPGGDSTNYGG----------RLDWANKNAQAAIDINRQIGGRSGMTASGSGVW 503
T+ G G GG+ +GG L ++ A+ ++++ Q+GG G+ ++G G
Sbjct: 103 TSAGEFGGGGEVRVWGGGNRSGEAAFISLQSGSRVAKRSMELGVQMGGEMGLGSNGGG-- 160
Query: 504 DLDKNTHISAGGMVSKEFGHRRPD 575
AGG V E HR D
Sbjct: 161 --------GAGGQVHDEMPHRNVD 176
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,084,979
Number of Sequences: 37544
Number of extensions: 558073
Number of successful extensions: 1241
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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