Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_H21
         (884 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.7  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   3.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   4.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.5  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   8.6  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   8.6  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   8.6  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 267 VIWFINFIMFFLFVGMFGVL 208
           VI +INF  FF   GM  VL
Sbjct: 6   VIKYINFDRFFFIEGMTNVL 25


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 746 WTCNWSFFYCRPKYRIYN 799
           W    +FFY  P+Y  YN
Sbjct: 210 WRITHNFFYFDPRYGNYN 227


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 605  PPLKSLTVFSTTKNVIIPPSTPRP 534
            PP  S    S  +   +PPS+P+P
Sbjct: 1269 PPAYSCGTVSVPQQQQLPPSSPQP 1292


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 746 WTCNWSFFYCRPKYRIY 796
           W C  S   C P Y IY
Sbjct: 533 WLCGLSSMLCIPGYMIY 549


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 746 WTCNWSFFYCRPKYRIY 796
           W C  S   C P Y IY
Sbjct: 586 WLCGLSSMLCIPGYMIY 602


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 175 SHSHSDESPAFKYSKH 222
           S SHS E  +FK SKH
Sbjct: 702 SGSHSWEGDSFKVSKH 717


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 356 IVPSMGIKKSIKNGTILINNVE 291
           ++P    +K   NGT++I NVE
Sbjct: 530 VLPINRKQKVFPNGTLIIENVE 551


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 136 NMLYHSLQTFSQFHKFKTNHFQTTTYKQ 53
           N LY+S    +  +   T  F+T+ Y+Q
Sbjct: 263 NNLYYSPVASTSLYYVNTEQFRTSDYQQ 290


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 136 NMLYHSLQTFSQFHKFKTNHFQTTTYKQ 53
           N LY+S    +  +   T  F+T+ Y+Q
Sbjct: 263 NNLYYSPVASTSLYYVNTEQFRTSDYQQ 290


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 136 NMLYHSLQTFSQFHKFKTNHFQTTTYKQ 53
           N LY+S    +  +   T  F+T+ Y+Q
Sbjct: 263 NNLYYSPVASTSLYYVNTEQFRTSDYQQ 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,162
Number of Sequences: 438
Number of extensions: 4679
Number of successful extensions: 20
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)