Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_H18
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...   107   2e-24
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    26   6.3  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  107 bits (258), Expect = 2e-24
 Identities = 47/84 (55%), Positives = 63/84 (75%)
 Frame = +2

Query: 155 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 334
           E+TFI VKPD VQRGL+G II +FE KG+KL  LKF+ PS +L+++HY++   +PF+  L
Sbjct: 4   EQTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKL 63

Query: 335 XKYMSSGPVVPMVWEGLNVVKTGR 406
             +M+SGPV  M+WEG   VKTGR
Sbjct: 64  VGFMASGPVCAMIWEGKQAVKTGR 87



 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 20/42 (47%), Positives = 27/42 (64%)
 Frame = +1

Query: 475 NLGRNIIHGSDSVESAKKEIGLWFTDXXVVGWTPAXENXVYE 600
           +LGRN+ HGSDS+ESA +EI LWF    +  +    E  +YE
Sbjct: 110 DLGRNVCHGSDSIESANREIKLWFQPSEIQVYDRTIEPWIYE 151



 Score = 35.9 bits (79), Expect = 0.008
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +3

Query: 366 LWYGRALML*RLAVIXLGATNPTDSQPGTIRGD 464
           +W G+  +  +   + LGA+NP DS PGTIRGD
Sbjct: 76  IWEGKQAV--KTGRLMLGASNPLDSAPGTIRGD 106


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 240 KPFFSKRSIMVPTRPRCTPSGLT 172
           KPF +KRS ++P RP  T   L+
Sbjct: 512 KPFVNKRSKVLPLRPSVTHDNLS 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,299,780
Number of Sequences: 5004
Number of extensions: 39359
Number of successful extensions: 84
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)