Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_H18
(901 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0445 - 18281715-18281832,18282274-18282505,18283486-182835... 123 2e-28
05_07_0347 - 29440541-29440664,29440908-29441020,29441522-294416... 122 4e-28
10_08_0945 - 21738643-21738760,21740056-21740287,21740582-217406... 116 3e-26
12_02_0695 + 22220054-22220056,22221226-22221276,22221415-222215... 115 6e-26
06_03_0999 - 26752410-26752523,26752601-26752830,26752914-267531... 29 5.0
05_01_0429 + 3399266-3399708,3401320-3401382,3403919-3404345,340... 29 6.7
>07_03_0445 -
18281715-18281832,18282274-18282505,18283486-18283534,
18283733-18283783
Length = 149
Score = 123 bits (297), Expect = 2e-28
Identities = 55/84 (65%), Positives = 67/84 (79%)
Frame = +2
Query: 155 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 334
E++FIM+KPDGVQRGL+G II RFEKKGF L G+KF+ QQHY+DL+ +PFFPGL
Sbjct: 2 EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGL 61
Query: 335 XKYMSSGPVVPMVWEGLNVVKTGR 406
+Y+ SGPVV MVWEG +VV TGR
Sbjct: 62 VEYIISGPVVAMVWEGKDVVATGR 85
Score = 48.0 bits (109), Expect = 1e-05
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = +1
Query: 469 AFNLGRNIIHGSDSVESAKKEIGLWFTDXXVVGWTPAXENXVYE 600
A +GRN+IHGSDSV++ KKEI LWF + + W +YE
Sbjct: 106 AVEVGRNVIHGSDSVDNGKKEIALWFPE-GLAEWRSNLHPWIYE 148
Score = 28.7 bits (61), Expect = 6.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 414 LGATNPTDSQPGTIRGDLCIQ 476
+GAT P ++ PGTIR D ++
Sbjct: 88 IGATRPWEAAPGTIRADYAVE 108
>05_07_0347 -
29440541-29440664,29440908-29441020,29441522-29441689,
29442341-29442391,29442518-29442555,29442885-29442978
Length = 195
Score = 122 bits (294), Expect = 4e-28
Identities = 54/86 (62%), Positives = 66/86 (76%)
Frame = +2
Query: 149 QRERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFP 328
+ ERTFI +KPDGVQRGL+ I+ RFE+KGFKLV +K V PS+E Q+HY DL RPFF
Sbjct: 44 EMERTFIAIKPDGVQRGLISEILSRFERKGFKLVAIKLVVPSKEFAQKHYHDLKDRPFFN 103
Query: 329 GLXKYMSSGPVVPMVWEGLNVVKTGR 406
GL ++SSGPV+ MVWEG V+K GR
Sbjct: 104 GLCDFLSSGPVLAMVWEGEGVIKYGR 129
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/40 (55%), Positives = 27/40 (67%)
Frame = +1
Query: 478 LGRNIIHGSDSVESAKKEIGLWFTDXXVVGWTPAXENXVY 597
+GRNIIHGSD E+AK EIGLWF +V +T E +Y
Sbjct: 153 VGRNIIHGSDGPETAKAEIGLWFEPRELVSYTSNEEKWIY 192
Score = 34.3 bits (75), Expect = 0.13
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +3
Query: 414 LGATNPTDSQPGTIRGDLCI 473
+GAT+P S+PGTIRGDL +
Sbjct: 132 IGATDPQKSEPGTIRGDLAV 151
>10_08_0945 -
21738643-21738760,21740056-21740287,21740582-21740630,
21740720-21740776
Length = 151
Score = 116 bits (278), Expect = 3e-26
Identities = 51/84 (60%), Positives = 65/84 (77%)
Frame = +2
Query: 155 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 334
E+TFIM+KPDGVQRGL+G +I RFEKKGF L +K + + ++HY+DL+S+PFF GL
Sbjct: 4 EQTFIMIKPDGVQRGLIGEVIGRFEKKGFYLKAMKLINVEKSFAEKHYADLSSKPFFGGL 63
Query: 335 XKYMSSGPVVPMVWEGLNVVKTGR 406
+Y+ SGPVV MVWEG VV TGR
Sbjct: 64 VEYIVSGPVVAMVWEGKQVVSTGR 87
Score = 51.2 bits (117), Expect = 1e-06
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +1
Query: 469 AFNLGRNIIHGSDSVESAKKEIGLWFTDXXVVGWTPAXENXVYE 600
A ++GRN+IHGSDSVE+A+KEI LWF + + W +YE
Sbjct: 108 AVDIGRNVIHGSDSVENARKEIALWFPE-GIAEWRSNQHPWIYE 150
Score = 32.7 bits (71), Expect = 0.41
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 414 LGATNPTDSQPGTIRGDLCI 473
+GATNP ++PGTIRGD +
Sbjct: 90 VGATNPLAAEPGTIRGDFAV 109
>12_02_0695 +
22220054-22220056,22221226-22221276,22221415-22221501,
22222064-22222144,22222241-22222353,22222482-22222531,
22222790-22222857
Length = 150
Score = 115 bits (276), Expect = 6e-26
Identities = 52/84 (61%), Positives = 64/84 (76%)
Frame = +2
Query: 155 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 334
E+++IM+KPDGVQRGLVG II RFEKKGF L GLK ++L Q+HY DL +PFFPGL
Sbjct: 3 EQSYIMIKPDGVQRGLVGEIISRFEKKGFVLKGLKLFQCPKDLAQEHYKDLKEKPFFPGL 62
Query: 335 XKYMSSGPVVPMVWEGLNVVKTGR 406
+Y++SGPVV M WEG VV + R
Sbjct: 63 IEYITSGPVVCMAWEGNGVVASAR 86
Score = 44.0 bits (99), Expect = 2e-04
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +1
Query: 469 AFNLGRNIIHGSDSVESAKKEIGLWFTDXXVVGW 570
A GRN++HGSDS ++ K+EI LWF + + W
Sbjct: 107 AVQTGRNVVHGSDSPDNGKREIALWFKEGELCEW 140
Score = 37.5 bits (83), Expect = 0.014
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +3
Query: 414 LGATNPTDSQPGTIRGDLCIQ 476
+GATNP ++PGTIRGDL +Q
Sbjct: 89 IGATNPLQAEPGTIRGDLAVQ 109
>06_03_0999 -
26752410-26752523,26752601-26752830,26752914-26753169,
26753763-26753828,26753921-26754046,26754148-26754288,
26754377-26754387,26754523-26754670,26755326-26755454,
26755573-26755710,26755808-26755876,26755955-26756023,
26756565-26756720,26756885-26756985,26757068-26757215,
26757540-26757702,26757833-26757965,26758049-26758226,
26758330-26758572,26758664-26758732,26759063-26759187,
26759727-26759766,26760756-26760812,26762831-26762935
Length = 1004
Score = 29.1 bits (62), Expect = 5.0
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Frame = +2
Query: 140 EQEQRERTFIMVKPDGVQRGLV-GTIIERFEKKGFKLVGLKFVWPSEELLQQHYSD--LA 310
+QE ER ++KP+ R L G+ ++F +KL+G+K +PS+++ + SD L
Sbjct: 629 DQELAERQLDVIKPNLQSRMLKEGSEYDQF----WKLLGVKSEYPSQKIAKDQESDPHLF 684
Query: 311 SRPFFPGLXK 340
S F G+ K
Sbjct: 685 SCTFSKGVLK 694
>05_01_0429 +
3399266-3399708,3401320-3401382,3403919-3404345,
3404863-3405141
Length = 403
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -1
Query: 229 FETFNNGAHKTTLYTIRLNHNKSTLTLFLLTHDXITN 119
+ +F +KTT+Y++RL+H S L LF + D N
Sbjct: 363 YRSFTWAEYKTTMYSLRLSH--SRLELFKIDDDDSDN 397
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,711,078
Number of Sequences: 37544
Number of extensions: 276772
Number of successful extensions: 592
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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