Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_H16
(902 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 40 0.004
11_01_0767 + 6438648-6438809,6439146-6440000 38 0.008
11_01_0750 - 6315126-6315896,6316371-6316784 37 0.019
05_06_0044 - 25150322-25151260 32 0.54
11_02_0012 - 7346282-7347136,7347234-7347593 31 1.7
11_02_0011 - 7337618-7338496,7338596-7338991 29 3.8
01_06_1263 + 35840502-35841308,35841763-35841969,35842272-358423... 28 8.8
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 39.5 bits (88), Expect = 0.004
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Frame = +3
Query: 666 GHWHVPFNASETEEKDFHVDEKTIIKKPTMRLLQSLFYTENEELGAKMIELPYKEPG--- 836
G W F+AS+T++ +FH+ + ++ P M + + + L K+++LPY++ G
Sbjct: 254 GAWTEKFDASKTKDGEFHLLDGKSVQAPFMSTSKKQYILSYDNL--KVLKLPYQQGGDKR 311
Query: 837 -FRMVVXLPXQIDG 875
F M + LP DG
Sbjct: 312 QFSMYILLPEAQDG 325
Score = 39.1 bits (87), Expect = 0.005
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Frame = +3
Query: 666 GHWHVPFNASETEEKDFHVDEKTIIKKPTMRLLQSLFYTENEELGAKMIELPYKEPG--- 836
G W F+ S+TE+ +FH+ + ++ P M + + + + L K+++LPY + G
Sbjct: 506 GAWAEKFDVSKTEDGEFHLLDGESVQAPFMSTRKKQYLSSYDSL--KVLKLPYLQGGDKR 563
Query: 837 -FRMVVXLPXQIDG 875
F M + LP DG
Sbjct: 564 QFSMYILLPEAQDG 577
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 38.3 bits (85), Expect = 0.008
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Frame = +3
Query: 666 GHWHVPFNASETEEKDFHVDEKTIIKKPTMRLLQSLFYTENEELGAKMIELPYKE----- 830
G W PF+ S+T E++F + + ++ P M+ ++ G +++ LPYK
Sbjct: 99 GEWLAPFDKSDTAEREFRRLDGSSVEVPFMQRPSGSYHHVACHDGFRVLRLPYKATSDTY 158
Query: 831 --------PGFRMVVXLPXQIDGXPXXL 890
P F M+V LP DG P L
Sbjct: 159 NLKLRYSLPSFAMLVFLPDDRDGLPGLL 186
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 37.1 bits (82), Expect = 0.019
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Frame = +2
Query: 383 LLNQRYAEFDPKFLTVANKIYVSDQYKLADAFSRTA-NLFRSEVDNINF-SAPKNAADII 556
+L R P+ L A ++ L+ F A N++ S +F + P++A D I
Sbjct: 88 VLRDRSTSGGPR-LAFAGGVWADASRSLSPEFVGLAGNVYGSAAKKADFKNKPEDAPDQI 146
Query: 557 NRWADEQTQGHIKTPVSEDKIDPATAVAMFNVIFFQ 664
N W + T+G + T + ID T + + + ++F+
Sbjct: 147 NSWVKDSTKGTVTTLLPAGTIDQNTGLVLGSALYFR 182
>05_06_0044 - 25150322-25151260
Length = 312
Score = 32.3 bits (70), Expect = 0.54
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Frame = +3
Query: 669 HWHVPFNASETEEKDFHVDEKTIIKKPTMR-LLQSLFYTENEELGAKMIELPYKEPG--- 836
+W PF TEE DFHV ++ P M Q F G ++ + Y+ G
Sbjct: 89 YWDHPFFPHLTEEGDFHVSPDHDVRVPFMAGSHQHAFMDVGCHPGFNVLRMMYRTGGAAG 148
Query: 837 ----FRMVVXLPXQIDGXP 881
F M + LP DG P
Sbjct: 149 GDKMFAMYIYLPDDRDGLP 167
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +2
Query: 533 PKNAADIINRWADEQTQGHIKTPVSEDKIDPATAVAMFNVIFFQ 664
PK++ IN+W + T I+ + + + TA+ + N I+F+
Sbjct: 121 PKSSRKKINKWVSKATNKLIREILPDGSVHGGTALVLVNAIYFK 164
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +2
Query: 440 IYVSDQYKLADAF-SRTANLFRSEVDNINFSA-PKNAADIINRWADEQTQGHIKTPVSED 613
++ + +L A+ + A +++ NF PK + IN+W + T I + +
Sbjct: 100 VWHDETLELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWVSKATNKLIPEILPDG 159
Query: 614 KIDPATAVAMFNVIFFQ 664
+ TA+ + N I+F+
Sbjct: 160 SVHVDTALVLVNAIYFK 176
>01_06_1263 +
35840502-35841308,35841763-35841969,35842272-35842370,
35843361-35843464,35844521-35844698,35844774-35845244,
35845383-35845523,35846290-35846349,35846427-35846490,
35847295-35847524,35847606-35847704
Length = 819
Score = 28.3 bits (60), Expect = 8.8
Identities = 20/80 (25%), Positives = 35/80 (43%)
Frame = +3
Query: 336 KSLGEGRLKSQHTHTDY*ISVTQNSTRNS*LSPIKYTFPTSISWPTRSPEQRICSEAKWT 515
K+ +G L +++ + + + +N T + S K P S S RSP +R S +
Sbjct: 375 KATADGILHTKNWDIEPLVPLPENITSTNLTSSAKDLSPFSFSTSRRSPSRRAKSRWEPV 434
Query: 516 TLTSALRRMPLISSTVGRTN 575
++ LIS +TN
Sbjct: 435 VEEKVANKVELISKESAKTN 454
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,177,598
Number of Sequences: 37544
Number of extensions: 515872
Number of successful extensions: 1414
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1413
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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