Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_H15
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...   159   4e-40
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...   155   6e-39
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    28   2.0  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    27   2.7  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    26   6.1  

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score =  159 bits (387), Expect = 4e-40
 Identities = 79/155 (50%), Positives = 108/155 (69%), Gaps = 2/155 (1%)
 Frame = +2

Query: 74  MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 253
           MGIDI   H RK +R++  S+++               T+++FN+ +L+RLF S+ NRPP
Sbjct: 1   MGIDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60

Query: 254 ISVSRLAR--HMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGG 427
           IS+S++A     K  + EG   V+VGTVT+D RL  +PK++VAAL  T+ ARARIL AGG
Sbjct: 61  ISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGG 120

Query: 428 EILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 532
           E+LT DQLALRAPTG  TVL++G+++AREA RHFG
Sbjct: 121 EVLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFG 155


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  155 bits (377), Expect = 6e-39
 Identities = 76/155 (49%), Positives = 107/155 (69%), Gaps = 2/155 (1%)
 Frame = +2

Query: 74  MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 253
           MGIDI   H +K +R++  S+++               T+++FN+ +L+RLF S+ NRPP
Sbjct: 1   MGIDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60

Query: 254 ISVSRLAR--HMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGG 427
           IS+S++A     K  + +    VVVGTVT+D R+  +PK+++AAL  T+ ARARIL AGG
Sbjct: 61  ISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGG 120

Query: 428 EILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 532
           E+LT DQLALRAPTG  TVLV+G+++AREA RHFG
Sbjct: 121 EVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFG 155


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 338 DVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQL 451
           D+  Y+IP + +  +  TE+A+ R     G+IL  D +
Sbjct: 59  DLLFYEIPFLLIKHIENTEEAKLRFALPQGQILEIDTI 96


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 439 SKNFSSSSQNACTSFFGNMKSSHRH 365
           SKN  SS  N+ TSFF ++ + +RH
Sbjct: 2   SKNSFSSMANSVTSFFQSLTTPNRH 26


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -2

Query: 436 KNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 323
           KN+ SS  +  TS + N+ +S+R +R  +QS V  + P
Sbjct: 170 KNWLSSELSHSTSKYLNITTSNRFIRKAIQSLVKIEFP 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,886
Number of Sequences: 5004
Number of extensions: 56894
Number of successful extensions: 179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)