Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_H15
(875 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 161 7e-40
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 158 5e-39
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 145 5e-35
01_01_0631 - 4752606-4752706,4754039-4755578 31 0.92
01_01_0529 + 3874865-3876285,3876352-3876367 31 1.2
01_06_0579 + 30379243-30379617 29 3.7
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904... 29 4.9
09_06_0121 + 20975132-20975755,20976834-20976977,20977333-209774... 29 6.5
11_01_0520 + 4078075-4078198,4078726-4078957,4079068-4079147,407... 28 8.5
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 161 bits (391), Expect = 7e-40
Identities = 84/161 (52%), Positives = 110/161 (68%), Gaps = 7/161 (4%)
Frame = +2
Query: 74 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 250
MGID + ++K +RT +S+D+ T + FN ++L+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRP 60
Query: 251 PISVSRLARHM--KKPTREGL----IAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARI 412
P+S+ RL R M K P R + IAV+VGTVT+D R+Y++P M VAAL TE ARARI
Sbjct: 61 PLSMRRLVRFMEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARARI 120
Query: 413 LAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 535
+ AGGE LTFDQLALRAP G+ TVL++G +NAREAV+HFGP
Sbjct: 121 INAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGP 161
Score = 35.9 bits (79), Expect = 0.043
Identities = 17/28 (60%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = +3
Query: 540 PGAPRSHTKPYVRTKGH--EKARPSRRA 617
PG P S+TKPYVR+KG EKAR R +
Sbjct: 163 PGVPHSNTKPYVRSKGRKFEKARGRRNS 190
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 158 bits (384), Expect = 5e-39
Identities = 82/154 (53%), Positives = 106/154 (68%), Gaps = 1/154 (0%)
Frame = +2
Query: 74 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 250
MGID + ++K +RT +S D+ T + FN ++L+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRP 60
Query: 251 PISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGE 430
P+S+ RLA+ M+ E IAV+VGTVT+D R+ +IPKM V AL TE ARARI+ AGGE
Sbjct: 61 PLSLRRLAKFMEGK-EENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGE 119
Query: 431 ILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 532
LTFDQLALRAP G+ TVL++G +NAREAVRHFG
Sbjct: 120 CLTFDQLALRAPLGENTVLLRGPKNAREAVRHFG 153
Score = 38.7 bits (86), Expect = 0.006
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = +3
Query: 540 PGAPRSHTKPYVRTKGH--EKARPSRRA 617
PG P SHTKPYVR+KG EKAR R +
Sbjct: 156 PGVPHSHTKPYVRSKGRKFEKARGRRNS 183
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 145 bits (351), Expect = 5e-35
Identities = 83/172 (48%), Positives = 107/172 (62%), Gaps = 18/172 (10%)
Frame = +2
Query: 74 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 250
MGID + ++K +RT KS D+ T + FN ++LRRLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP 60
Query: 251 PISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGE 430
P+S+ RL R M+ +E IAV+VGTVT+D R+Y++P M VAAL TE ARARI+ GGE
Sbjct: 61 PLSLRRLVRFMEG--KENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGE 118
Query: 431 ILTFDQLALRAPTGKKT-----------------VLVQGQRNAREAVRHFGP 535
LTFDQLALRAP G+ T VL++G +NAREAV+HFGP
Sbjct: 119 CLTFDQLALRAPLGQNTYIAMPEILTIDNFALLQVLLRGPKNAREAVKHFGP 170
Score = 35.9 bits (79), Expect = 0.043
Identities = 17/28 (60%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = +3
Query: 540 PGAPRSHTKPYVRTKGH--EKARPSRRA 617
PG P S+TKPYVR+KG EKAR R +
Sbjct: 172 PGVPHSNTKPYVRSKGRKFEKARGRRNS 199
>01_01_0631 - 4752606-4752706,4754039-4755578
Length = 546
Score = 31.5 bits (68), Expect = 0.92
Identities = 28/100 (28%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Frame = +1
Query: 343 ETVQDTEDDGGCSSCYRKSSCTHFGCW--RRNSYF*SAGSSCS----DWQEDSTGTRSAK 504
+ V D + GC R TH G N + S+ S S W ED T A
Sbjct: 320 DPVADIDRGRGCPQASRSLCATHHGIKFVNVNQHGGSSSRSFSITLWSWHEDQTWREDAT 379
Query: 505 CS*GSASLWPXLQEHRALTLNPMFAPRDMKKQGPVVVLMS 624
+A LW E+R + P F DM+ V L++
Sbjct: 380 LD--AAQLWELDSENRLPNVRPEFPVVDMENPYAVCFLLN 417
>01_01_0529 + 3874865-3876285,3876352-3876367
Length = 478
Score = 31.1 bits (67), Expect = 1.2
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Frame = +1
Query: 355 DTEDDGGCSSCYRKSSCTHFGCWRRNSYF*SAGS-SCSDWQEDSTGTRSAKCS*GSASLW 531
D+E GC R TH G N GS S + W GT + +A LW
Sbjct: 314 DSERGRGCPEASRNVCATHHGIKFVNIINQCGGSFSITLWSWCEDGTWREDATLDAAQLW 373
Query: 532 PXLQEHRALTLNPMFAPRDMKKQGPVVVLMS 624
E+R + P F DM+ V L++
Sbjct: 374 DLDCENRLPNVQPEFPIVDMENPYTVCFLLN 404
>01_06_0579 + 30379243-30379617
Length = 124
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -1
Query: 353 CTVSRHL*LSPLPRQSNPHELASS 282
CT+S H SP+ R S+PH LASS
Sbjct: 11 CTISCH---SPMRRSSSPHRLASS 31
>06_01_1101 -
9044679-9045320,9045484-9045890,9046020-9046274,
9046375-9046498,9047237-9047289,9047388-9047648,
9047795-9047848,9047975-9048458,9048554-9048592
Length = 772
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -3
Query: 324 PTTTAIKPSRVGFFMWR-AKRDTEIGGRLIRLIKSR 220
P TTA KP RV F + + K D E+ G L L+++R
Sbjct: 676 PNTTAPKPKRVRFALPKDTKIDREVRGELQELMEAR 711
>09_06_0121 +
20975132-20975755,20976834-20976977,20977333-20977457,
20978090-20978194,20978755-20978989
Length = 410
Score = 28.7 bits (61), Expect = 6.5
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +2
Query: 191 NAKFNQIVLRRLFMSR-INRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 367
N K N VL L +S+ + P ++V L H + P +V+GT T+D + +
Sbjct: 21 NWKKNAPVLYDLVISQPLEWPSLTVQWLPSHSRSPGSARSHRLVLGTHTSDETPNHL-LL 79
Query: 368 TVAALHVTEKARARILAAGGEI 433
AAL + + A AAGG +
Sbjct: 80 ADAALPLPPRLAAAAAAAGGAV 101
>11_01_0520 +
4078075-4078198,4078726-4078957,4079068-4079147,
4079256-4079409,4079438-4079494,4080733-4080811,
4081013-4081094,4081168-4081223,4081310-4081492
Length = 348
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 421 SSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 323
SS ++ SF + SS+RHL L+ + + CP
Sbjct: 96 SSLDSVRSFAKSFNSSYRHLNVLINNAGVMSCP 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,837,987
Number of Sequences: 37544
Number of extensions: 410628
Number of successful extensions: 1136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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