Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_H10
(906 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0570 + 30070338-30071606 30 2.2
06_01_1082 - 8847795-8848033,8848511-8848724 29 3.8
03_02_0513 + 9035204-9035422,9035552-9036091,9036512-9036742,903... 29 3.8
02_01_0312 - 2082614-2082677,2082815-2082945,2083041-2083129,208... 29 3.8
06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078... 29 5.1
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 29 5.1
04_03_0232 - 13049649-13052807 29 5.1
>02_05_0570 + 30070338-30071606
Length = 422
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +2
Query: 764 WSSXTIVNAS--GRPQGRWTRWVKSPVFLTSTRGSLPLSK 877
W+ +V A+ P+ W WV S LT LPLS+
Sbjct: 150 WAKIPVVRAAMVAHPEAEWVWWVDSDAVLTDMDFRLPLSR 189
>06_01_1082 - 8847795-8848033,8848511-8848724
Length = 150
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +1
Query: 646 RVVYGGNSADSTR--EQWFFQPAKYENDVLFFIYNRQFNDALELGYDRERLGETARPLDT 819
+ Y G++A R + W Y DVL F YN++++D +G R + R DT
Sbjct: 42 KTYYVGDAAGWGRNLDWWLAGKTFYAGDVLVFKYNKEYHDVAVVGGKGYRRCKVPRNKDT 101
>03_02_0513 +
9035204-9035422,9035552-9036091,9036512-9036742,
9036829-9036969,9037344-9037541,9037644-9037937
Length = 540
Score = 29.5 bits (63), Expect = 3.8
Identities = 29/100 (29%), Positives = 47/100 (47%)
Frame = +3
Query: 144 ELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRRNTME 323
E++ DTS + EE L+ ++ D D A L+ S + +I+ + D R T+
Sbjct: 444 EITPDTSTETAEEMLHRWLMKEDVDRA----LDGLSPRERQVIRYRFG--MDDGRLRTLH 497
Query: 324 YCYKLWVGNGQEIVRKYFPLNFRTHHGRKLCQDHLQKLQP 443
+L +G +E +R+ + FR GRK Q LQP
Sbjct: 498 DIGRL-MGVSRERIRQIELVAFRKLRGRKKVQSLQHYLQP 536
>02_01_0312 -
2082614-2082677,2082815-2082945,2083041-2083129,
2083223-2083292,2083429-2083509,2083768-2083821,
2084864-2085067,2086272-2086366,2086976-2086997,
2087492-2087585,2087677-2087764,2087874-2087979,
2088103-2088189,2088261-2088309,2088418-2088521,
2088605-2088697,2088900-2088974,2089316-2089384,
2090182-2090250,2090339-2090374,2090471-2090565,
2090836-2090911,2091067-2091153,2091287-2091355,
2091654-2091731,2091836-2091925,2092436-2092642,
2092736-2092879
Length = 841
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 818 RWVKSPVFLTSTRGSLPLSKRPKTLL 895
RW P FLT+ RG LSKR + LL
Sbjct: 191 RWFGEPAFLTNARGYPCLSKRHQKLL 216
>06_02_0187 +
12805788-12807007,12807059-12807186,12807811-12807859,
12808508-12808853
Length = 580
Score = 29.1 bits (62), Expect = 5.1
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = -3
Query: 304 LSMIRLLTTFWMMEPLPWL-----SYSKL*RTALS*SPVRMLLYSFSSRSWLEVSADSST 140
L+++ L+ W + P L + S L SP + SF S + S D++T
Sbjct: 36 LALLTLIMALWQLHPYQPLVLLPAALSSSPCPLLPRSPTSGIAVSFLSTAAATNSTDTAT 95
Query: 139 TPALAASMHIANTTR 95
P A+ +A TTR
Sbjct: 96 VPTTTAAARVAATTR 110
>04_04_1263 -
32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 29.1 bits (62), Expect = 5.1
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Frame = +3
Query: 234 SLEYESQGKGSIIQNVVNNLIIDKRRNTME------YCYKLWV-GNGQEIVRKYFPLNFR 392
S++ ++ G ++ +V+ L I + T Y ++LW GN E++ K+F ++
Sbjct: 684 SVKSDTYSFGVLLLEIVSGLKISSSKLTPNFFSLTAYAWRLWKDGNATELLDKFFVDSYP 743
Query: 393 THHGRKLCQ--DHLQKLQP 443
H CQ D L +P
Sbjct: 744 LHEAFSFCQSDDRLTPAKP 762
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = -3
Query: 190 YSFSSRSWLEVSADSSTTPALAASMHIANTTRSFILLGAFQIAFKSANQILRNSL 26
+ SS+ W + STT A++ + SF + A + KS++ ILR +
Sbjct: 288 FGLSSKEWRHTNRWISTTHQYVATVKVPPQATSFFVTEAGSLIDKSSSMILRGDM 342
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,125,189
Number of Sequences: 37544
Number of extensions: 475686
Number of successful extensions: 1327
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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