Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_H09
         (877 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53336-10|AAA96182.2|  125|Caenorhabditis elegans Hypothetical p...    32   0.47 
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    31   1.1  
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z81492-3|CAB04030.1|  382|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical pr...    28   7.6  
X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit ...    28   7.6  
U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha nicot...    28   7.6  

>U53336-10|AAA96182.2|  125|Caenorhabditis elegans Hypothetical
           protein K07C11.10 protein.
          Length = 125

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 18/47 (38%), Positives = 28/47 (59%)
 Frame = -3

Query: 734 LERTTYTELRYLQREL*ESATLPEGRKADRYPVSGQGRNRRAHEGAS 594
           L+  T  +L  +QRE  E   +PEG+KA R P S +  + +++EG S
Sbjct: 66  LKTITTQKLEKMQREQMERLQVPEGQKA-RTPESAEAESPKSNEGPS 111


>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
           protein protein.
          Length = 1439

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
 Frame = -2

Query: 747 HTAQLG-ANDLHRTEIPTA*AM--------RKRHASRREKGGQVSGKRPGSEQESARGSF 595
           H++Q G + D+   E PTA A         +K  A+++  GG  SG   GS+Q+ A G+ 
Sbjct: 717 HSSQAGPSRDIENGEAPTATATTPKSGRKWKKSKAAKQGSGGGSSGSSSGSQQQGAAGAP 776

Query: 594 Q 592
           Q
Sbjct: 777 Q 777


>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
           protein C04D8.1 protein.
          Length = 1317

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
 Frame = -2

Query: 747 HTAQLG-ANDLHRTEIPTA*AM--------RKRHASRREKGGQVSGKRPGSEQESARGSF 595
           H++Q G + D+   E PTA A         +K  A+++  GG  SG   GS+Q+ A G+ 
Sbjct: 595 HSSQAGPSRDIENGEAPTATATTPKSGRKWKKSKAAKQGSGGGSSGSSSGSQQQGAAGAP 654

Query: 594 Q 592
           Q
Sbjct: 655 Q 655


>Z81492-3|CAB04030.1|  382|Caenorhabditis elegans Hypothetical
           protein E03H4.6 protein.
          Length = 382

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 19  LTIGNSLRFLLIWIQT**DTLMSLDK-PQLECSEKNALFVKFV 144
           LTI    +F  +WI++  + LMS DK  Q++ SE +   +KF+
Sbjct: 258 LTIRKYFQFSNVWIESAWNYLMSADKHVQIDDSELDLTLLKFI 300


>Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical
           protein T08G11.5 protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 436 SHVLSCVIXLILWITVLPPLSELIPLAA 353
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit of
           nicotinic acetylcholinereceptor protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 436 SHVLSCVIXLILWITVLPPLSELIPLAA 353
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit precursor
           protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 436 SHVLSCVIXLILWITVLPPLSELIPLAA 353
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,426,874
Number of Sequences: 27780
Number of extensions: 393351
Number of successful extensions: 1171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)